Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02338 ATGGCTAGGTCTGCGAAAGGGCATCAGGATGAATTCGACGAAGATGATGAAGAAGAACTCTTAACTGGAAACATCTCTTCCAAAGTGAAGGTGGATGAACCCAGCACGGGGAAGAGGGTGAACCCTCATCGTTCAAAGCATTCAGAAACTGAGCAACGTAGAAGGAGCAAGATTAACGAAAGGCAAGCTTTAAAGAAAGAAAAAAAAAACTTATTTATTTATTTTTTTGTTAATTGTTTGTTTCAAGTTCTGAGAGATCTCATACCTCAAAATGATCAAAAAAGAGACAAGGCATCCTTCTTGTTGGAGGTCATTGAGTATATTCAGTTCCTACAGGAAAAAATACAAATTTATGAACAGACTTATGAAGGATGGAATCAGGAGCCCACGAAATTAACTCCATGGAGAAATCATCATGGGCCTGCAGAAAATACTACAGATCCTTCTCAAGCTTCACAAAATGGGTCTGTTGATGAGAAAAATAACAATGTCTCTCCATTGTTGCCCAAAAATGTACAGAACCTGATAGAATCTGACTTCTCAATGACAACTATTCAGAAGGACCACACCCCTGGTTCAACTACAGAAGCAGTTCCGCTTCCCATGCAAATGCGATTGGACATGTTTGATCCAATTGTTAGCAGTGGTATGGCAACCCAACATCTGCAGGAACCTGTATCTAATGTTAACATGCCTTCCCATACCCAGCCTCAATTGTGGCTTAATAAACAAAGCAAGGGCAACTATATTGTTCCACATAATGATACAATGAAGGAACAGGAGGAGCTGGTGATTGAAAGTGGATCAGATAGCATCTCAAGTGCCTATTCTCAGGGAATTTTAGATTCTCTCACGCAAGCATTGCACTCTTCGGGCGTAGATATGTCCCAGACTAATGTCTCAGTGCAAATTGATGTGGGGAGACGAGCAAATTCTGGGTTGATCCCCTCTGCATATACTTCAAAGGGCCATGAAAACCAATTTGTGAGCAACCCAGCAATAGCACGTTCCGGGGTTGATTACTGCAATATTGATTCTGAACAAAGTTCAAAGCGGCTCAGACAAGAAGCAAGCTAG 1077 0.4132 MARSAKGHQDEFDEDDEEELLTGNISSKVKVDEPSTGKRVNPHRSKHSETEQRRRSKINERQALKKEKKNLFIYFFVNCLFQVLRDLIPQNDQKRDKASFLLEVIEYIQFLQEKIQIYEQTYEGWNQEPTKLTPWRNHHGPAENTTDPSQASQNGSVDEKNNNVSPLLPKNVQNLIESDFSMTTIQKDHTPGSTTEAVPLPMQMRLDMFDPIVSSGMATQHLQEPVSNVNMPSHTQPQLWLNKQSKGNYIVPHNDTMKEQEELVIESGSDSISSAYSQGILDSLTQALHSSGVDMSQTNVSVQIDVGRRANSGLIPSAYTSKGHENQFVSNPAIARSGVDYCNIDSEQSSKRLRQEAS 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02338 358 CDD bHLH_AtBIM_like 44 136 - -
Gma08g02338 358 Gene3D - 41 132 IPR036638 GO:0046983
Gma08g02338 358 MobiDBLite consensus disorder prediction 32 61 - -
Gma08g02338 358 SMART finulus 48 117 IPR011598 GO:0046983
Gma08g02338 358 Coils Coil 47 67 - -
Gma08g02338 358 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 140 IPR036638 GO:0046983
Gma08g02338 358 PANTHER TRANSCRIPTION FACTOR BIM3 1 357 - -
Gma08g02338 358 Coils Coil 108 128 - -
Gma08g02338 358 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 357 IPR044295 GO:0003700|GO:0006351|GO:0046983
Gma08g02338 358 MobiDBLite consensus disorder prediction 129 167 - -
Gma08g02338 358 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 42 111 IPR011598 GO:0046983
Gma08g02338 358 Pfam Helix-loop-helix DNA-binding domain 78 112 IPR011598 GO:0046983
Gma08g02338 358 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02338 Gma-Chr8 22688811 22692004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02338 3 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 37.798 9.81e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma08g02338 HLH 3.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02338 - - gmx:100791730 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02492 18 59041737 59045961 Gma08g02338 08 22688811 22692004 GST