Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02320 ATGGGAAGGGGTAGGGTTCAGCTGAAACGGATCGAGAACAAAACTAGCCAGCAAGTGACGTTTTCCAAGCGTAGATCGGGACTTCTCAAGAAAGCCAACGAAATCTCTGTGCTATGTGATGCTCAAGTTGCTTTGATTATGTTCTCTACCAAAGGAAAACTTTTTGAGTATTCCTCTGAACGCAGCATGGAAGACGTCCTGGAACGTTACGAGAGATATACACATACAGCACTTACTGGAGCTAATAACAATGAATCACAGGGAAATTGGTCTTTCGAATATATCAAGCTCACCGCCAAAGTTGAAGTCTTGGACAGGAACGTAAGGAATTTCTTGGGAAATGATCTGGATCCCTTGAGTTTGAAAGAGCTTCAGAGTTTGGAGCAGCAGCTTGACACAGCTCTGAAGCGCATCCGAACAAGAAAGAATCAAGTTATGAATGAATCCATCTCAGACCTGCATAAAAGGATGAAGGAGAAAGCGAAAACAGTGACTGAAGGTCCACATACTGGCCCAGAAACTCTAGGCCCAAATTCATCGACCCTTAACTTAACTTCTCCACAGCTACCACCACCACCACAAAGACTGGTTCCTTCTCTAACTCTCTGTGAGACATTCCAAGGAAGAGCATTGGTGGAAGAAACGGGAAAGGCTCAAACAGTCCCTAGTGGCAATTCTCTCATCCCACCATGGATGCTTCATATCTGA 708 0.4463 MGRGRVQLKRIENKTSQQVTFSKRRSGLLKKANEISVLCDAQVALIMFSTKGKLFEYSSERSMEDVLERYERYTHTALTGANNNESQGNWSFEYIKLTAKVEVLDRNVRNFLGNDLDPLSLKELQSLEQQLDTALKRIRTRKNQVMNESISDLHKRMKEKAKTVTEGPHTGPETLGPNSSTLNLTSPQLPPPPQRLVPSLTLCETFQGRALVEETGKAQTVPSGNSLIPPWMLHI 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02320 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma08g02320 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma08g02320 235 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma08g02320 235 ProSiteProfiles K-box domain profile. 87 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma08g02320 235 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 212 - -
Gma08g02320 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gma08g02320 235 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Gma08g02320 235 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Gma08g02320 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma08g02320 235 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Gma08g02320 235 Coils Coil 121 144 - -
Gma08g02320 235 Pfam K-box region 84 159 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma08g02320 235 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma08g02320 235 PANTHER MADS BOX PROTEIN 1 212 - -
Gma08g02320 235 MobiDBLite consensus disorder prediction 160 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02320 Gma-Chr8 22448104 22460685 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02320 1 159 MADS-box Gene Family AT1G26310 64.815 6.62e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma08g02320 K-box 6.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02320 K09264 - gmx:100786580 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02484 18 58912900 58920971 Gma08g02320 08 22448104 22460685 GST
Gma08g02320 08 22448104 22460685 Gma13g00373 13 15630255 15651702 PCT
Gma08g02320 08 22448104 22460685 Gma19g00325 19 4569232 4586899 PCT