Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02319 ATGGGTAGGGGAAGAGTGGAGTtgaagaggatagagaacaagataaacaggcaagttacgtttgcaaagaggagaaatgggcttctcaagaaagcctatgagctatctgttctctgtgatgctgaggttgccctcatcatcttctcCAACCGTGGCAAGCTTTATGAGTTCTGTAGCAGCTCTAGCATGCTCAAAACACTTGAAAGGTACCAGAAATGCAGTTATGGTGCTGTGGAAGTTACCAAACCTGCCAAAGAGCTCGAGCAGAGCAGCTATCGTGAATACTTGAAGCTGAAAGCAAGATTTGAATCACTTCAAAGGACTCAAAGAAACCTTCTAGGGGAAGACCTGGGCCCACTGAATACCAAAGAACTTGAGCATCTTGAACGGCAATTGGATTCATCTCTAAAGCAAGTGAGGTCCACAAAGACACAATTCATGCTGGACCAGTTATCTGATCTTCAAACTAAGGAGCAGATGTTGGTAGAAGCAAACAGATCCTTGACAGTGAAGCTGGAAGAAATCAATTCAAGAAACCACTACAGGCAATCATGGGAAGCTGGTGATCAAAGTATGCCATACGGTGGTGGTCCACAGAATTCTCACTCTCATCAGGGCTTCTTCCAGCCATTGGAATGCAACCCTACATTGCAGATTGGTCCTGATTACAGGTACAATGATGTAGCTTCAGATCAGATAACTGCCACAACTCAACCTCAACAAGTGAGTGGCTTTATTCCAGGGTGGATGCTGTGA 756 0.377 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYGAVEVTKPAKELEQSSYREYLKLKARFESLQRTQRNLLGEDLGPLNTKELEHLERQLDSSLKQVRSTKTQFMLDQLSDLQTKEQMLVEANRSLTVKLEEINSRNHYRQSWEAGDQSMPYGGGPQNSHSHQGFFQPLECNPTLQIGPDYRYNDVASDQITATTQPQQVSGFIPGWML 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02319 251 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma08g02319 251 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma08g02319 251 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma08g02319 251 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma08g02319 251 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma08g02319 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gma08g02319 251 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Gma08g02319 251 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma08g02319 251 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Gma08g02319 251 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gma08g02319 251 Pfam K-box region 88 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma08g02319 251 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Gma08g02319 251 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 238 - -
Gma08g02319 251 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 238 - -
Gma08g02319 251 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02319 Gma-Chr8 22430234 22435239 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02319 1 251 MADS-box Gene Family AT5G15800 70.722 1.79e-118 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma08g02319 K-box 1.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02319 K09264 - gmx:100786066 503.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02483 18 58893997 58899459 Gma08g02319 08 22430234 22435239 GST
Gma13g00376 13 15680377 15686111 Gma08g02319 08 22430234 22435239 PCT
Gma19g00324 19 4545909 4551489 Gma08g02319 08 22430234 22435239 PCT
Gma08g02319 08 22430234 22435239 Gma13g00376 13 15680377 15686111 PCT
Gma08g02319 08 22430234 22435239 Gma19g00324 19 4545909 4551489 PCT