Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02318 ATGATGGGTTCGCTTGCTACACAGAAAGGGTGGAGGAAAGGCCCTTGGACTGGTGAAGAGGACAAGTTGTTAAGTGAATATGTTAGCTTGCATGGGGATGGTAGGTGGAGTTCGGTGGCGAAATTTACAGGATTAAATAGGAGCGGCAAAAGTTGCAGGTTAAGATGGGTAAATTATTTGAGACCCGGCCTCAAGAAAGGTCAATTAACACCGCTGGAAGAAGAAATCATTATTGAACTGCAAGCAACCTTGGGTAACAAGTGGTCTACAATAGCTAAGTACTTGTCGGGTAGAACTGATAACGAGATTAAGAATTACTGGAGAACTCACTTCGGGAAGAGGGAGAGATCCAAACACAAGAAGAAGCTGCAAAGGCCAAAAGTGAAAAGGGTGCTTAAACAATTGAAACACAAGCAACAACAGGAACAACAACCTCAAGAGTATGATATTAAAAGCATCATGTCTCATGAAGAGACCGTAAACGAAACAAAATCCTTTGAGACACAAAATTGTAAGCAACAAGAAATGGGCTTCATGTATCCAACAACAGAGCACCAATATACCGTTCCTAATTCCCTGCATGAGGGATTCTCGTCCACGTGGCAAGACAGTACTCTAGTGGATGATGACTCATGGTTTAGTTTATGGGACTTTGATGAACCACAAGGTTTTTCTGATTATGTTGACCAGTTTAGCAAATGTGCCATGCCAAATCAAGCTACCTTTCGAGTTGGAGGGGATTATTCCATGCAAAATGATGTTAAAACTTCTCGTTTTGATGATGCATACGATAACGACCTCTTCTACGGAAAAGACATGTTTGGATGA 828 0.4167 MMGSLATQKGWRKGPWTGEEDKLLSEYVSLHGDGRWSSVAKFTGLNRSGKSCRLRWVNYLRPGLKKGQLTPLEEEIIIELQATLGNKWSTIAKYLSGRTDNEIKNYWRTHFGKRERSKHKKKLQRPKVKRVLKQLKHKQQQEQQPQEYDIKSIMSHEETVNETKSFETQNCKQQEMGFMYPTTEHQYTVPNSLHEGFSSTWQDSTLVDDDSWFSLWDFDEPQGFSDYVDQFSKCAMPNQATFRVGGDYSMQNDVKTSRFDDAYDNDLFYGKDMFG 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02318 275 Gene3D - 68 165 - -
Gma08g02318 275 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Gma08g02318 275 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Gma08g02318 275 Gene3D - 13 65 - -
Gma08g02318 275 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Gma08g02318 275 CDD SANT 15 60 IPR001005 -
Gma08g02318 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Gma08g02318 275 SMART sant 65 113 IPR001005 -
Gma08g02318 275 SMART sant 12 62 IPR001005 -
Gma08g02318 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Gma08g02318 275 PANTHER MYB TRANSCRIPTION FACTOR 1 227 - -
Gma08g02318 275 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 227 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gma08g02318 275 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Gma08g02318 275 CDD SANT 70 111 IPR001005 -
Gma08g02318 275 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02318 Gma-Chr8 22404833 22406412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02318 10 224 MYB Transcription Factor Family AT3G30210 48.636 1.91e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma08g02318 Myb_DNA-binding 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02318 K09422 - gmx:100785540 532.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02482 18 58883108 58884130 Gma08g02318 08 22404833 22406412 GST