Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02231 ATGGGTAGGTCTCAATGTTTGGTTTCTTTGGCCTTTTTAATGGTTCTCTTTGTACCAGCCTTGTCACATGGCAGTCGTCATCGAAGAAGTGGATGGCATCTAGCCCATGCAACTTTCTATGGAGACATGCAAGGTGGAGACACCATGCAGGGTGCTTGTGGCTATGGTGATCTCTACCAGCAAGGTTATGGGCTAGAAACCACAGCCCTAAGCACAGCTCTATTCAACAATGGGCTCACTTGTGGTGCATGTTTTGAGATCATGTGTGTGAACGAGCCCCAATGGTGCATTCCCAACGCAGGCTCAATCAAAGTGACCGCAACAAATTTCTGCCCCCCTAATTACAACCCACCTAATTTCGACCATTGGTGCAACCCTCCACAAGAACACTTCGACTTGTCCATGAAAATGTTCACCAAAATTGCCATATACAGAGCAGGGATCATCCCAGTCATGTATCGCCGTGTCCCATGCAACAAAAGTGGCGGTGTCAAGTTTGAGATGAAAGGGAACCCTTATTGGTTGTTGGTTTTGTTGTACAATGTTGCCAGTGCTGGTGATGTTACTCAAGTGAGCATCAAAGGGTCTTCAAACACCGGCTGGAAATCTATGTCACGTGTTTGGGGACAGAATTGGGTTACTGGGTCTAATTTGGTAGGACAAGCCTTGTCATTTCAGGTCACTACTAGTGATGGTAAAATGATGGAGTTTGATAATGTTGCTCCTTCTAATTGGCAATTTGGACAGAGCTACGAGACCTACCAAAACTTTTAG 774 0.4574 MGRSQCLVSLAFLMVLFVPALSHGSRHRRSGWHLAHATFYGDMQGGDTMQGACGYGDLYQQGYGLETTALSTALFNNGLTCGACFEIMCVNEPQWCIPNAGSIKVTATNFCPPNYNPPNFDHWCNPPQEHFDLSMKMFTKIAIYRAGIIPVMYRRVPCNKSGGVKFEMKGNPYWLLVLLYNVASAGDVTQVSIKGSSNTGWKSMSRVWGQNWVTGSNLVGQALSFQVTTSDGKMMEFDNVAPSNWQFGQSYETYQNF 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02231 257 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Gma08g02231 257 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Gma08g02231 257 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Gma08g02231 257 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Gma08g02231 257 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Gma08g02231 257 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Gma08g02231 257 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Gma08g02231 257 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Gma08g02231 257 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Gma08g02231 257 PANTHER EXPANSIN-A15 21 253 IPR002963 GO:0009664
Gma08g02231 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 163 IPR007112 -
Gma08g02231 257 Gene3D - 160 257 IPR036749 -
Gma08g02231 257 Gene3D - 17 159 IPR036908 -
Gma08g02231 257 Pfam Lytic transglycolase 67 153 IPR009009 -
Gma08g02231 257 Pfam Expansin C-terminal domain 164 242 IPR007117 -
Gma08g02231 257 PANTHER EXPANSIN 21 253 - -
Gma08g02231 257 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Gma08g02231 257 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Gma08g02231 257 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Gma08g02231 257 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Gma08g02231 257 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Gma08g02231 257 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Gma08g02231 257 SUPERFAMILY Barwin-like endoglucanases 31 181 IPR036908 -
Gma08g02231 257 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
Gma08g02231 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 253 IPR007117 -
Gma08g02231 257 SMART dpbb_1 67 153 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02231 Gma-Chr8 21267266 21268868 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02231 19 257 Expansin Gene Family AT5G39270 61.506 1.05e-110 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02231 - - gmx:100789595 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02426 18 58330316 58331933 Gma08g02231 08 21267266 21268868 GST