Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02210 ATGCAAGTTCCGGTGGGAGGGCGAGTCCCCACATGGTTCTCTCGGCAAAGACTCCTCGAAGAGAAGCTGTGCGACCTTCACAAGTGCAGCAATTTGGACTCTGTGAACCAAATCCACGCTCAAGTCCTCAAAGCCAATCTCCACCAAGACCTCTTCGTCGCTCCCAAACTCATCGCCGCCTTCTCCCTCTGCCGCCACCTCGCCTCCGCCGTCAACGTCTTCAACCACGTCCCCCACCCCAACGTCCACCTCTACAACTCCATCATCAGAGCCCACGCCCACAACACTTCCCACCCTTCTCTCCCCTTCAACGCTTTCTTCCAAATGCAGAAAAATGGACTCTTTCCTGATAATTTCACGTACCCTTTTCTCCTTAAGGCCTGCACTGGCCCCTCCTCACTTCCTTTGGTCCGAATGATTCATGCCCATGTCGAAAAATTTGGTTTTTATGGGGATATCTTTGTGCCCAATTCGCTTATTGACTCCTACTCCAGGTGTGGCAGTGCCGGGCTTGATGGGGCCATGAGCTTGTTTTTGGCCATGAAGGAGCGGGATGTGGTCACTTGGAACTCCATGATTGGTGGGTTGGTCAGATGTGGTGAGTTGGAGGGTGCTTGTAAGCTGTTTGATGAAATGCCTGAGAGGGATATGGTTAGTTGGAACACCATGTTGGATGGGTACGCCAAGGCAGGGGAGATGGACAGGGCGTTTGAGCTGTTTGAGAGAATGCCCCAGAGGAATATCGTTTCGTGGTCGACGATGGTTTGCGGGTATAGCAAGGGTGGTGACATGGATATGGCGAGGGTGTTGTTCGATAGGTGTCCAGCCAAGAATGTGGTGCTTTGGACGACGATAATAGCGGGGTATGCTGAGAAGGGGTTCGTGAGGGAGGCGACGGAGTTGTATGGGAAGATGGAGGAGGCTGGGTTGAGGCCTGATGATGGGTTTTTGATTAGCATTCTGGCGGCGTGTGCTGAGTCTGGAATGCTTGGGTTGGGGAAGAGAATTCATGCTTCTATGAGGAGGTGGAGGTTTAGATGTGGCACTAAGGTGTTGAATGCGTTTATTGATATGTATGCCAAGTGTGGTTGTTTAGATGCGGCCTTTGATGTCTTTAGTGGAATGATGGCGAAGAAAGATGTGGTGTCTTGGAATTCGATGATTCAGGGGTTTGCCATGCATGGACATGGCGAGAAAGCGCTTGAGCTTTTTTCTAGGATGGTACCCGAAGGTTTTGAGCCAGATACATATACATTTGTTGGCCTTTTGTGTGCTTGCACTCATGCTGGCCTTGTTAATGAAGGGCGTAAGTACTTTTATTCGATGGAGAAAGTGTATGGGATTGTTCCTCAAGTTGAGCATTATGGTTGTATGATGGACCTTCTCGGCCGCGGCGGACACCTGAAAGAAGCTTTCACGCTTTTGCGCAGCATGCCTATGGAACCCAATGCCATTATATTGGGTACTCTTTTGAATGCTTGTCGGATGCATAATGATGTAGATTTTGCAAGAGCTGTGTGTGAACAGCTGTTTAAGGTGGAGCCAACAGATCCAGGGAATTACTCCCTTCTGTCAAATATTTATGCTCAAGCAGGAGATTGGATGAATGTTGCCAATGTAAGGTTACAAATGATGAATACAGGAGGTCAAAAGCCTTCTGGGGCCAGTTCCATAGAGGTAGAAGAAGAAGTGCATGAATTTACTGTATTTGATCAGTCGCACCCTAAATCAGATGATATATATAAGATGATTGACAGATTGGTACAGGACCTAAGGCAGGTTGGATATGTTCCGATGATACATCAGTAG 1809 0.4865 MQVPVGGRVPTWFSRQRLLEEKLCDLHKCSNLDSVNQIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHNTSHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPSSLPLVRMIHAHVEKFGFYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKLFDEMPERDMVSWNTMLDGYAKAGEMDRAFELFERMPQRNIVSWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAACAESGMLGLGKRIHASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSRMVPEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFTLLRSMPMEPNAIILGTLLNACRMHNDVDFARAVCEQLFKVEPTDPGNYSLLSNIYAQAGDWMNVANVRLQMMNTGGQKPSGASSIEVEEEVHEFTVFDQSHPKSDDIYKMIDRLVQDLRQVGYVPMIHQ 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02210 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 215 IPR002885 -
Gma08g02210 602 Gene3D Tetratricopeptide repeat domain 446 578 IPR011990 GO:0005515
Gma08g02210 602 Gene3D Tetratricopeptide repeat domain 234 344 IPR011990 GO:0005515
Gma08g02210 602 Pfam E motif 497 559 IPR046848 -
Gma08g02210 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Gma08g02210 602 PANTHER OS01G0913400 PROTEIN-RELATED 17 600 - -
Gma08g02210 602 Gene3D Tetratricopeptide repeat domain 345 445 IPR011990 GO:0005515
Gma08g02210 602 Pfam PPR repeat 249 275 IPR002885 -
Gma08g02210 602 Pfam PPR repeat 218 248 IPR002885 -
Gma08g02210 602 Pfam PPR repeat 353 377 IPR002885 -
Gma08g02210 602 Pfam PPR repeat 454 479 IPR002885 -
Gma08g02210 602 Pfam PPR repeat family 379 426 IPR002885 -
Gma08g02210 602 Pfam PPR repeat family 277 314 IPR002885 -
Gma08g02210 602 Pfam PPR repeat family 80 128 IPR002885 -
Gma08g02210 602 Pfam PPR repeat family 184 215 IPR002885 -
Gma08g02210 602 Gene3D Tetratricopeptide repeat domain 135 233 IPR011990 GO:0005515
Gma08g02210 602 Gene3D Tetratricopeptide repeat domain 14 134 IPR011990 GO:0005515
Gma08g02210 602 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 17 600 - -
Gma08g02210 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 278 312 IPR002885 -
Gma08g02210 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Gma08g02210 602 TIGRFAM PPR: pentatricopeptide repeat domain 382 416 IPR002885 -
Gma08g02210 602 TIGRFAM PPR: pentatricopeptide repeat domain 280 313 IPR002885 -
Gma08g02210 602 TIGRFAM PPR: pentatricopeptide repeat domain 352 378 IPR002885 -
Gma08g02210 602 TIGRFAM PPR: pentatricopeptide repeat domain 218 249 IPR002885 -
Gma08g02210 602 TIGRFAM PPR: pentatricopeptide repeat domain 249 273 IPR002885 -
Gma08g02210 602 TIGRFAM PPR: pentatricopeptide repeat domain 187 218 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02210 Gma-Chr8 21005970 21007851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02210 26 598 Glycoside Hydrolase AT3G49170 31.239 1.37e-92 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02210 - - gmx:100782677 1228.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g02210 08 21005970 21007851 Gma08g02210 08 21005970 21007851 ECH