Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02197 ATGCAACCCACATCCGGCGGCGGCGGGCTGGCAAGGTTCCGTTCAGCTCCGGCGAGCTGGTTAGAATCAGTTCTGTTGAAGGAAGAGGAAGAAGAAGAAGACCCCTTAAGCTTCACTCAACTGCTTTCCACTATCGATGATGCTCCCTCTCATTCTCAACACCAACTCTATGGTGCCGCTCTCTCAAACAAGGATAAAACACCTGAAATCTTCATGTTAGAAGATTCCGTTCCTTGCAGAGTGAGGGCTAAGCGTGGCTGTGCTACTCATCCCAGGAGTATTGCTGAAAGGGTTCGCAGGACTCGTATCAGTGACCGCATCAGAAAGCTGCAAGAACTTGTGCCAAACATGGATAAGCAAACAAATACTGCAGATATGTTAGATGAGGCTGTAGCGTATGTCAAGTTTCTACAAAAGCAAATTGAGGAACTGTCAGAGCACCAACGGAGGTGTAAATGCGTGGTTCAAGAGTAA 474 0.4789 MQPTSGGGGLARFRSAPASWLESVLLKEEEEEEDPLSFTQLLSTIDDAPSHSQHQLYGAALSNKDKTPEIFMLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLDEAVAYVKFLQKQIEELSEHQRRCKCVVQE 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02197 157 SMART finulus 93 143 IPR011598 GO:0046983
Gma08g02197 157 Pfam Helix-loop-helix DNA-binding domain 92 138 IPR011598 GO:0046983
Gma08g02197 157 CDD bHLH_AtbHLH_like 92 145 IPR045239 -
Gma08g02197 157 PANTHER TRANSCRIPTION FACTOR BHLH117-RELATED 65 151 - -
Gma08g02197 157 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 87 137 IPR011598 GO:0046983
Gma08g02197 157 Gene3D - 88 157 IPR036638 GO:0046983
Gma08g02197 157 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 65 151 - -
Gma08g02197 157 Coils Coil 127 157 - -
Gma08g02197 157 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 90 154 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02197 Gma-Chr8 20867116 20870108 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02197 72 157 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 81.395 1.85e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma08g02197 HLH 8.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02197 - - gmx:100527723 285.804