Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02180 ATGGAACTCACCATCCCACGCAACCCCAACCCTCTTCTCGTTTCCTCACCCCCACCACTCTCTCGAAACCCCAACGTCTTCACCTTAACCGTGCCGCGCCGCCGCAGAAGGATTCGGTTTCGGGTCTCGGCCGCCGCGGAGCCCGATGGGCCGTCGTGGTCGCAATCGCTGCTGCGCGGGTCACGGCGGTTTTGGGGAAAGTTTGGGGAAATGGTAAAGAAGGAGACGGGTCTCGACTTCGAAAACAGGAGTGTGAAGAAAGTTGGCGAGTTTGTGAACGGAGATGAATTGCGAAGGTTGGGGACTGATTGGGTGTTTCGGTTTGTCGATTGGAATCGTTGGGAACGGTGGAAGAATATCAAGGATTGGGAACCTAAGCGAATTGGTGCATTGGTTCTTTACATTTTTGTTGTGACATTTGCTTGTAGAGGAGTATATGTAACAATTCAAGCACCTTTCCTAAGTCGCCAGAAAAAAGAGTTGACAGAAGCTTACATGGAAGCGTTAATTCCTGAACCATCCCCTACCAACATTAAAAGATTTAAAAAGGGTATGTGGAAGAAGACAATGCCGAAAGGCCTGAAAATGAAAAAGCTTATTGAAAGACCTGATGGAACACTTGTTCATGATACTTCTTATGTTGGAGAGGATGCATGGGAGGATGATCGAGAGGCTCCTGAGGAGCGTGTAAAACAAATTATAGAGGATGATGAAAGGTTAAACAAAGAAGAGAAGAAAGAGTTAACAAAAGGCTTGGGCATTTCAGCAGGTGAAGTTCAAACTGATGGCACATGGCGTGATAGACTTAATAAATGGAGAGAGATCCTTAGTAAAGAACGTTTTTCTGAGCAAGTGGATTCCTTAAATGCCAAATATGTAGTTGAATTCGACATGAAAGAGGTTGAAAATAGTCTTCGCAAGGATGTGGCAGAAAAGGTGACACCCACTCAGGGTACAAGGGCTTTGTGGATAGCTAAGAGATGGTGGCGCTATCGCCCTAAACTTCCTTACACTTATTTCCTTGACAAACTCGATAGTTCTGAGGTAGCAGCCGTTGTCTTTACTGAAGACTTGAAAAGATTGTATGTGACGATGAAAGAAGGTTTTCCATTGGAATTTGTTGTTGATATCCCTCTTGATCCGTATATGTTTGAGATTATTACAAGTTCCGGAGTTGAAGTAGATCTCCTTCAGAAGCGACAGATCCATTATTTCATGAAGGTTGTGATTGCATTAGTACCTGGAATACTGATTCTCTGGCTTATAAGGGAGTCTGTAATGCTTCTACACATTACTAACAAGAGGTTTCTTTACAAGAAGTATAATCAACTCTATGATATGGCTCATGCTGAAAATTTCATCATGCCAGTTGGAGATGTTGGTGAAACAAAATCAATGTACAAGGAAGTTGTGTTGGGGGGTGATGTCTGGGATCTTCTTGATGAGTTAATGATCTATATGGGAAATCCTATGCAATTCTATGAAAGGGATGTGCAGTTTGTTCGGGGTGTTCTACTCTCTGGACCTCCAGGAACTGGAAAAACACTTTTTGCCAGGACGCTTGCAAAAGAAAGTGGATTACCTTTTGTATTTGCTTCAGGTGCAGAATTCACTGATAGTGAAAAAAGTGGTGCAGCTAGGATCAATGAGATGTTTTCCATTGCTAGGAGAAATGCACCTTGTTTTGTATTTGTGGATGAAATAGACGCTATTGCTGGAAGACATGCTAGGAAGGATCCACGGAGAAGGGCAACTTTTGAGGCTCTTATTGCACAGCTTGATGGGGAGAAGGAAAAAACTGGTGTAGACCGTGTATCCCTCAGACAAGCTATCATATTTATCTGTGCCACAAATAGGCCAGATGAATTAGATCTTGAGTTTGTTCGTGCTGGACGTATTGATCGTCGTCTGTACATTGGTTTGCCTGATGCAAAGCAGAGAGTTCAAATTTTTGGTGTGCACAGTTCCGGAAAGCAACTTGCAGAGGATGTGGATTTTGACGAGCTTGTCTTCCGTACTGTTGGATTCTCTGGAGCAGATATAAGAAACCTTGTCAACGAATCAGCAATAATGTCGGTGAGAAAAGGGCATTCCAAAATTTTCCAGCAAGATATTATTGATGTACTAGATAAACAACTGCTTGAGGGTATGGGTGTCCTTCTGACAGAGGAAGAGCAACAAAAATGTGAACAAAGGTTATCCTTTGAAAAGAAGAGACTGCTTGCTGTTCATGAAGCTGGTCATGTAGTGCTAGCTCACTTATTTCCTCGGTTTGACTGGCATGCATTTTCACAGCTCCTGCCTGGTGGTAAGGAAACTGCAATATCTGTATTTTATCCTCGAGAAGATATGGTAGACCAAGGCTATACAACATTTGGTTACATGATGATGCAAATGGTAGTAGCTCATGGTGGTCGATGTGCTGAACGTATTATATTTGGTGATGATATAACTGATGGTGGAAGTGATGATCTTGAAAAGATAACGAAG 2490 0.4289 MELTIPRNPNPLLVSSPPPLSRNPNVFTLTVPRRRRRIRFRVSAAAEPDGPSWSQSLLRGSRRFWGKFGEMVKKETGLDFENRSVKKVGEFVNGDELRRLGTDWVFRFVDWNRWERWKNIKDWEPKRIGALVLYIFVVTFACRGVYVTIQAPFLSRQKKELTEAYMEALIPEPSPTNIKRFKKGMWKKTMPKGLKMKKLIERPDGTLVHDTSYVGEDAWEDDREAPEERVKQIIEDDERLNKEEKKELTKGLGISAGEVQTDGTWRDRLNKWREILSKERFSEQVDSLNAKYVVEFDMKEVENSLRKDVAEKVTPTQGTRALWIAKRWWRYRPKLPYTYFLDKLDSSEVAAVVFTEDLKRLYVTMKEGFPLEFVVDIPLDPYMFEIITSSGVEVDLLQKRQIHYFMKVVIALVPGILILWLIRESVMLLHITNKRFLYKKYNQLYDMAHAENFIMPVGDVGETKSMYKEVVLGGDVWDLLDELMIYMGNPMQFYERDVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPCFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGEKEKTGVDRVSLRQAIIFICATNRPDELDLEFVRAGRIDRRLYIGLPDAKQRVQIFGVHSSGKQLAEDVDFDELVFRTVGFSGADIRNLVNESAIMSVRKGHSKIFQQDIIDVLDKQLLEGMGVLLTEEEQQKCEQRLSFEKKRLLAVHEAGHVVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDMVDQGYTTFGYMMMQMVVAHGGRCAERIIFGDDITDGGSDDLEKITK 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02180 830 Gene3D - 461 642 IPR027417 -
Gma08g02180 830 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 12, CHLOROPLASTIC 33 830 - -
Gma08g02180 830 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 466 711 IPR027417 -
Gma08g02180 830 Gene3D - 643 716 - -
Gma08g02180 830 Pfam Peptidase family M41 733 830 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gma08g02180 830 Pfam ATPase family associated with various cellular activities (AAA) 504 640 IPR003959 GO:0005524|GO:0016887
Gma08g02180 830 SUPERFAMILY FtsH protease domain-like 734 830 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gma08g02180 830 Pfam AAA+ lid domain 663 704 IPR041569 -
Gma08g02180 830 PANTHER ATP-DEPENDENT PROTEASE 33 830 - -
Gma08g02180 830 Coils Coil 827 830 - -
Gma08g02180 830 Gene3D Peptidase M41 726 830 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gma08g02180 830 SMART AAA_5 500 643 IPR003593 -
Gma08g02180 830 CDD AAA 502 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02180 Gma-Chr8 20617005 20675142 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02180 467 830 Miscellaneous Gene Families AT5G53170 32.514 4.45e-53 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02180 K03798 - gmx:100819005 1615.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g02180 08 20617005 20675142 Gma08g02180 08 20617005 20675142 ECH