Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02164 ATGACTTGTTTCCCATTCTCATTTGGTAAGAAAGTGCGCTTTGTGGCAACACATGATCCAGATATTGATGAAGTACTCTCAGGCATTCAAAATGTAAGAATCTATACCTACAAAGAACTAAAAGTTGCCTCTGACAATTTCAGTCCGGCCAATAAAATTGGGCAGGGTGGATTTGGTTCAGTTTATAAGGGACTGCTAAAAGATGGGAAAGTAGCTGCCATAAAAGTACTTTCAGCAGAATCAAGTCAAGGGGTAAAGGAATTTATGACAGAGATTAATGTAATCTCAGAAATAGAGCATGAAAATTTGGTTAAGCTATATGGTTGTTGTGTGGAAGGGAATCAGCGAATCTTGGTCTACAATTATGTTGAGAACAATAGCCTTGCACAAACCCTTCTAGGTTCAGGTCACAGTAATATCGTTTTTGATTGGAAAACACGATCTAGGATTTGCATTGGGATTGCACGTggacttgcttatcttcatgaagaagtaataccacatattgttcacagagatataaaagcaagcaatattctccttgaccaaaaccttacacccaagatttctgattttggtcttgcaaagcttattccaTCATACATGACTCATGTCAGCACACGTGTGGCAGGAACAATAGGTTATTTGGCACCAGAGTATGCAATAAGGGGGCAGCTGACACGTAAAGCAGATATTTACAGCTTTGGTGTCCTTCTCGTGGAGATAGTTAGTGGAAGATGCCACACAAATTCACGATTACCAATAGGAGAGCAATATCTTTTGGAAATGACATGGGAACTTTATCAGAAAAGAGAATTGGTAGGGCTTGTAGACATATCACTAGATGGCCATTTCGATGCCGAGGAGGCATGTAAGTTTCTGAAAATTGGACTTCTTTGCACTCAGGACACGTCGAAGCTCCGGCCGACCATGTCATCTGTGGTCAAGATGCTCACAAGAGAAATGGATATTGATGAAAGTAAGATAACAAAGCCAGGCTTGATTCCAGATTTTAACGACCTTAAAATCAAAGAAAAAGGCAGTGATATTGATACCAAGGCTTCGTCATCTTTCTATAATGCATCCTCTGCCTCAGACAGCCAGAGCAATACCATGTCATATGCTGCAAGCACAACTACAACCTTCACTGCGAAATATGATCAAAGTTTGTAA 1173 0.3606 MTCFPFSFGKKVRFVATHDPDIDEVLSGIQNVRIYTYKELKVASDNFSPANKIGQGGFGSVYKGLLKDGKVAAIKVLSAESSQGVKEFMTEINVISEIEHENLVKLYGCCVEGNQRILVYNYVENNSLAQTLLGSGHSNIVFDWKTRSRICIGIARGLAYLHEEVIPHIVHRDIKASNILLDQNLTPKISDFGLAKLIPSYMTHVSTRVAGTIGYLAPEYAIRGQLTRKADIYSFGVLLVEIVSGRCHTNSRLPIGEQYLLEMTWELYQKRELVGLVDISLDGHFDAEEACKFLKIGLLCTQDTSKLRPTMSSVVKMLTREMDIDESKITKPGLIPDFNDLKIKEKGSDIDTKASSSFYNASSASDSQSNTMSYAASTTTTFTAKYDQSL 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02164 390 CDD STKc_IRAK 53 320 - -
Gma08g02164 390 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 374 - -
Gma08g02164 390 Gene3D Transferase(Phosphotransferase) domain 1 123 331 - -
Gma08g02164 390 PANTHER - 2 374 - -
Gma08g02164 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Gma08g02164 390 ProSiteProfiles Protein kinase domain profile. 47 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g02164 390 PIRSF TyrPK_CSF1-R 125 246 - -
Gma08g02164 390 PIRSF TyrPK_CSF1-R 290 389 - -
Gma08g02164 390 PIRSF TyrPK_CSF1-R 44 128 - -
Gma08g02164 390 SMART serkin_6 47 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g02164 390 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Gma08g02164 390 Gene3D Phosphorylase Kinase; domain 1 19 122 - -
Gma08g02164 390 SUPERFAMILY Protein kinase-like (PK-like) 26 318 IPR011009 -
Gma08g02164 390 Pfam Protein kinase domain 50 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02164 Gma-Chr8 20195760 20200537 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02164 14 331 Receptor kinase-like Gene Family AT1G53430 52.978 1.73e-108 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gma08g02164 Pkinase 7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02164 - - gmx:100797706 766.148