Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02152 ATGGGAAACTCGCATGCTAAAAAGCGTGACACTCAATTTTCCAGAAACGTTGTTAAAGGGAGAGTTCCCTCTCCAAAAGACAAAACCTTATCATCATTACAGTCACCATCATCACCATCACAATCACCATCACCGTCGCTAGAACCACCGCGAGAACCACCACCACCGGTTATGTTTTTTAATACGGGTTCGGGAAAACTATCTGCCAAAGAGAAATATGCTCTAATTCCTGATAACTTCACTACCCTTGAACAGGTTACAACTGCCTTGAGGAAGGAAGGTTTAGAATCATCAAATCTTGTCCTTGGAATTGATTTCACAAAAAGCAATGAATGGACTGGAAGTGTCTCATTCAACAATAAAAGCCTTCATGCTATTGGAAGTACCGCTAACCCCTATGAGAAAGCCATCTCTATTATTGGCAAGACTCTTGCTCCCTTTGATGATGATAACTTGATTCCATGTTTTGGCTTTGGGGATGCGACCACTCATGATCAAGAAGTGTTTAGCTTTCACAGTGATCATTCACCTTGCCATGGTTTTGAGGAAGTTTTGGCTTGCTATCAAAAAGTTGTTCCAAATTTGAGACTGTCTGGACCAACATCTTATGCTCCTGTGATTGAGGCTGCAATAGACATAGTTGAGAAAAGTCATGGCCAATTCCATGTGTTAGTTATTGTTGCAGATGGCCAGGTTACAACAAGTGCTGCATCTGAACATGGAGAACTCAGTCCACAAGAAGCAAGGACAATCAAAGCAATAGTTGATGCAAGTTCATATCCCCTTTCTATTATTCTGGTTGGAGTTGGTGATGGACCCTGGGAAGACATGAAGAAGTTTGATGACAAGATACCCGCTCGCGACTTTGACAATTTTCAGTTTGTTAACTTCACTGACATAATGACCAAGAAATCAAGCCCCTCAGAAAAAGAAACTGCTTTTGCTCTGGCTGCTCTTATGGAGATACCTTTCCAATATAAAGCAGCCATTGAACTTGAACTACTTGGTCGTGCAACAGGGAGATCAAATAAAATAGTTCCAAGACCTCCTCCAGCTCCATATTCCCGGCTTGTGCCACCAGCTCGCGTTCTGAGCAATATGCCAACTTTCATGGATGATGAGAGAAACCAAATGGCTTGTGCTATTTGTCTGACCAATAAAAAGGATTTGGCATTTGGATGTGGTCACATGACTTGTAGAGATTGTGGATCTAGGTTAACCAATTGTCCGATATGCCGTCAGAGGATCACCAATCGTCTTAGGGTGTTTTCTAGCTGA 1278 0.4218 MGNSHAKKRDTQFSRNVVKGRVPSPKDKTLSSLQSPSSPSQSPSPSLEPPREPPPPVMFFNTGSGKLSAKEKYALIPDNFTTLEQVTTALRKEGLESSNLVLGIDFTKSNEWTGSVSFNNKSLHAIGSTANPYEKAISIIGKTLAPFDDDNLIPCFGFGDATTHDQEVFSFHSDHSPCHGFEEVLACYQKVVPNLRLSGPTSYAPVIEAAIDIVEKSHGQFHVLVIVADGQVTTSAASEHGELSPQEARTIKAIVDASSYPLSIILVGVGDGPWEDMKKFDDKIPARDFDNFQFVNFTDIMTKKSSPSEKETAFALAALMEIPFQYKAAIELELLGRATGRSNKIVPRPPPAPYSRLVPPARVLSNMPTFMDDERNQMACAICLTNKKDLAFGCGHMTCRDCGSRLTNCPICRQRITNRLRVFSS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02152 425 MobiDBLite consensus disorder prediction 42 57 - -
Gma08g02152 425 SMART VWA_4 97 300 IPR002035 -
Gma08g02152 425 CDD RING-HC_RGLG_plant 380 423 IPR045317 GO:0061630|GO:0070534
Gma08g02152 425 MobiDBLite consensus disorder prediction 1 15 - -
Gma08g02152 425 SUPERFAMILY vWA-like 98 280 IPR036465 -
Gma08g02152 425 ProSiteProfiles Zinc finger RING-type profile. 380 413 IPR001841 -
Gma08g02152 425 Pfam Zinc finger, C3HC4 type (RING finger) 377 417 - -
Gma08g02152 425 SMART ring_2 380 412 IPR001841 -
Gma08g02152 425 SUPERFAMILY RING/U-box 374 419 - -
Gma08g02152 425 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RGLG4 66 423 - -
Gma08g02152 425 MobiDBLite consensus disorder prediction 27 41 - -
Gma08g02152 425 PANTHER COPINE FAMILY PROTEIN 1 66 423 - -
Gma08g02152 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 369 425 IPR013083 -
Gma08g02152 425 MobiDBLite consensus disorder prediction 1 59 - -
Gma08g02152 425 Pfam Copine 122 335 IPR010734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02152 Gma-Chr8 19965447 19973505 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02152 K16280 - gmx:100795579 815.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g02152 08 19965447 19973505 Gma08g02152 08 19965447 19973505 ECH
Gma08g01624 08 14471394 14474265 Gma08g02152 08 19965447 19973505 PCT
Gma08g02152 08 19965447 19973505 Gma08g01624 08 14471394 14474265 PCT