Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02147 ATGGCAGAACCATCTCCTCCTCCGCCGCTGGCACCACCGCCACCGCCACAGTCGACTCCACCTCGTCCTCAGCCGGCCGACAGCGTCCGTGTTCGGTGTGCCGGCTGCCGCATGATCCTGACTGTGGCCCCCGGCCTCACCGAATTCGCGTGCCCTACCTGCCGAATGCCGCAGATGCTTCCACCGGAGCTCATGCCAAAGGCGGCGGTGGCCAACGTGGCGGCAGCACCGCTTCCTCCGACATCCGCTCCGCCATCGCAGCCATCGCAAGCACCGGCGCATGGCATTGATCCCACTAAGATCCAGCTTCCCTGCGCCTCGTGCAAGGCCATCCTCAACGTCCCTCACGGCCTCCCCCGCTTCGCTTGCCCTCAGTGCGGGGTTGACCTCGCCGTCGATGTCTCCAAGGTTAAGCAGTTCTTTCCCGCGCCGCTGCTGCCAGAAGAAGTTAATGAGGTTGCTGTTGAAGTGGAGCGGGACGAAGATGAAGGTGGCATGGTTGGAGAAACATTTACAGATTATCGGCCGCCAAAAGTATCTATTGGACCTCCACACCCAGATCCTGTTGTGGAGACATCTTCTTTGTCTGCAGTGCAGCCTCCTGAGCCAACTTATGATCCAAAAATTAAAGATGATTTGGAAAATTCAAAGGCTTTGTCTTGCTTGCAAATTGAGACATTGGTCTATGCTTCTCAGAGACACCTCCAACACCTCTCAAATGGAGCTAGGGCAGGGTTTTTTATTGGAGATGGAGCTGGTGTAGGTAAAGGTCGAACTATTGCAGGGCTGATTTGGGAGAACTGGCATCACTATAGGAGGAAAGCATTGTGGATTTCTGTTGGTTCAGACTTGAAGTTTGATGCTAGAAGAGACTTGGATGATGTTGGTGCAACATGCATTGAAGTGCATGCTTTGAACAAACTGCCTTATTCTAAGCTTGATTCAAAGTCTGTTGGGGTCAGGGAGGGAGTTGTTTTTTCGACGTACAATAGCCTCATAGCATCTTCTGAGAAAGGTCGTTCTCGTCTCCAGCAGCTCATACAGTGGTGTGGACCAGGGTTTGATGGTCTTATAATTTTTGATGAGTGTCACAAAGCAAAAAATTTGGTCCCTGAATCTGGTAGTCAGCCGACACGAACTGGAGAAGCAGTGGTTGATATCCAGGATCGACTACCTGAAGCTCGTGTTGTTTATTGCTCAGCAACTGGAGCATCTGAACCTCGTAATATGGGTTATATGGTTCGACTTGGTCTTTGGGGAGATGGGACTTCATTCACTGATTTCCGGGAATTTCTAGGTACTCTTGACAGAGGGGGTGTTGGAGCTCTTGAACTAGTTGCCATGGACATGAAAGCAAGGGGTATGTATTTATGTCGGACACTTAGCTATGAGGGTGCAGAGTTTGAAGTTATCGAAGCACCATTAGAGGATAAAATGATGGACATGTATAAAAAGGCAGCAGAATTTTGGGCTGAATTACGTGTAGAATTGCTGTCAGCCAGTGCCTTCCTAAATGACAAACCAAATTCTAGTCAACTATGGCGATTATACTGGGCCAGCCACCAACGTTTCTTTAGACACATATGTATGTCTGCTAAAGTCCCTGCTGCTGTGAGACTAGCGAAGCAAGCATTAGTTGAAGAAAAATCTGTAGTCATTGGTCTTCAGAGTACTGGAGAAGCTAGGACAGAGGAAGCTGTAACAAAATATGGTTCTGAACTTGATGACTTTGTTTCTGGACCTCGAGAATTGCTGCTTAAATTTGTGGAAGAAAATTACCCGTTACCAGAAAAACCTGAACTTCTCCCAGGAGAGGATGGGGTAAAAGAACTCCAACGGAAGAGGCATTCTGCAACTCCCGGTGTTTCAGTAAAAGGAAGGGTCAGAAAAGTAGCCAAGTGGCAGCCTCCTAGTGATGCTGAAAGTGATGAAGACTCTGAGACTGACTCTGGCATTGAATCTACTGACTCTGATGATGAGTTTCAAATATGTGAAATTTGTACTACAGAGGAGGAAAGGAAAAAATTGCTACAGTGTTCCTGCTGCAGTAAGTTAGTCCATTCCACATGCCTGATGCCACCAATTGGTGATATAGTTCCTGAAGAGTGGTCATGCCATTTGTGTAAGGAGAAAACAGATGAATATCTTCAAGCTAGACAGGCCTACATAGCTGAACTTCAAAAGAGGTATGATGCAGCCTCGGAACGCAAGACAAAAATATTAGACATAATTCGTGCTCTGGATCTTCCAAATAATCCTTTGGATGATATTGTTGACCAGCTAGGAGGCCCTGACAAAGTTGCAGAAATGACAGGAAGGAGAGGCATGCTTGTGAGGGCTTCTACTGGAAAGGGTGTTACTTATCAGGCTCGTAATACAAAAGATGTCACTATGGAAATGGTTAACATGCATGAAAAGCAGCTCTTTATGGATGGTAAAAAGTTTGTTGCTATTATCTCTGAAGCTGGATCAGCTGGTGTATCTTTGCAGGCTGATAGGCGAGCTGCAAATCAGAAAAGACGGGTTCATTTAACACTTGAACTTCCATGGAGTGCTGACCGGGCAATCCAGCAGTTTGGAAGAACTCATCGATCAAATCAAGCTTCAGCACCAGAATACAG 2621 0.4735 MAEPSPPPPLAPPPPPQSTPPRPQPADSVRVRCAGCRMILTVAPGLTEFACPTCRMPQMLPPELMPKAAVANVAAAPLPPTSAPPSQPSQAPAHGIDPTKIQLPCASCKAILNVPHGLPRFACPQCGVDLAVDVSKVKQFFPAPLLPEEVNEVAVEVERDEDEGGMVGETFTDYRPPKVSIGPPHPDPVVETSSLSAVQPPEPTYDPKIKDDLENSKALSCLQIETLVYASQRHLQHLSNGARAGFFIGDGAGVGKGRTIAGLIWENWHHYRRKALWISVGSDLKFDARRDLDDVGATCIEVHALNKLPYSKLDSKSVGVREGVVFSTYNSLIASSEKGRSRLQQLIQWCGPGFDGLIIFDECHKAKNLVPESGSQPTRTGEAVVDIQDRLPEARVVYCSATGASEPRNMGYMVRLGLWGDGTSFTDFREFLGTLDRGGVGALELVAMDMKARGMYLCRTLSYEGAEFEVIEAPLEDKMMDMYKKAAEFWAELRVELLSASAFLNDKPNSSQLWRLYWASHQRFFRHICMSAKVPAAVRLAKQALVEEKSVVIGLQSTGEARTEEAVTKYGSELDDFVSGPRELLLKFVEENYPLPEKPELLPGEDGVKELQRKRHSATPGVSVKGRVRKVAKWQPPSDAESDEDSETDSGIESTDSDDEFQICEICTTEEERKKLLQCSCCSKLVHSTCLMPPIGDIVPEEWSCHLCKEKTDEYLQARQAYIAELQKRYDAASERKTKILDIIRALDLPNNPLDDIVDQLGGPDKVAEMTGRRGMLVRASTGKGVTYQARNTKDVTMEMVNMHEKQLFMDGKKFVAIISEAGSAGVSLQADRRAANQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEY 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02147 873 ProSitePatterns Zinc finger PHD-type signature. 664 708 IPR019786 -
Gma08g02147 873 PANTHER OS08G0223700 PROTEIN 142 873 - -
Gma08g02147 873 MobiDBLite consensus disorder prediction 641 656 - -
Gma08g02147 873 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 427 IPR027417 -
Gma08g02147 873 Pfam C-terminal domain on Strawberry notch homologue 752 873 IPR026937 -
Gma08g02147 873 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 647 735 IPR013083 -
Gma08g02147 873 PANTHER STRAWBERRY NOTCH-RELATED 26 142 IPR026741 GO:0006355
Gma08g02147 873 MobiDBLite consensus disorder prediction 628 656 - -
Gma08g02147 873 MobiDBLite consensus disorder prediction 1 28 - -
Gma08g02147 873 MobiDBLite consensus disorder prediction 1 23 - -
Gma08g02147 873 PANTHER OS08G0223700 PROTEIN 26 142 - -
Gma08g02147 873 Pfam P-loop containing NTP hydrolase pore-1 184 484 IPR039187 -
Gma08g02147 873 PANTHER STRAWBERRY NOTCH-RELATED 142 873 IPR026741 GO:0006355
Gma08g02147 873 MobiDBLite consensus disorder prediction 76 96 - -
Gma08g02147 873 Gene3D - 216 414 IPR027417 -
Gma08g02147 873 ProSiteProfiles Zinc finger PHD-type profile. 661 711 IPR019787 -
Gma08g02147 873 SMART PHD_3 663 709 IPR001965 -
Gma08g02147 873 SUPERFAMILY FYVE/PHD zinc finger 655 714 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02147 Gma-Chr8 19802167 19859901 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02147 - - gmx:100804594 1649.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g02147 08 19802167 19859901 Gma08g02147 08 19802167 19859901 ECH