Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma08g02145 | ATGTTTAGATCCATGCTCCAAGTAGTGTTTGGTGGCAGTGCTGCTAGTAGTTCTTCAAACATTGAACATGATGATGAAATTAGTTCATCATCATCATGGGAAACGAGGGTGTCAATAACTCAGTACAAGTCATTGTGCCACAGTCATGATATAGGAGGAAGAACAAGTGTGGCTATGGTGGGCTGCTGCATTTGTTTGTGTCATTTTGAAGCCAATGAAGAGGTTAGTGAGTTGCCTTGCAAGCATTACTTCCACAAAGGTTGCTTAGACAAATGGTTTGATAACAAACACAGCCCTTGCCCCTTGTGTCGTTCCATCGACTAG | 324 | 0.4259 | MFRSMLQVVFGGSAASSSSNIEHDDEISSSSSWETRVSITQYKSLCHSHDIGGRTSVAMVGCCICLCHFEANEEVSELPCKHYFHKGCLDKWFDNKHSPCPLCRSID | 107 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma08g02145 | 107 | ProSiteProfiles | Zinc finger RING-type profile. | 62 | 104 | IPR001841 | - | |
| Gma08g02145 | 107 | PANTHER | - | 1 | 106 | IPR044249 | - | |
| Gma08g02145 | 107 | SMART | ring_2 | 62 | 103 | IPR001841 | - | |
| Gma08g02145 | 107 | MobiDBLite | consensus disorder prediction | 12 | 33 | - | - | |
| Gma08g02145 | 107 | PANTHER | F21J9.24-RELATED | 1 | 106 | - | - | |
| Gma08g02145 | 107 | SUPERFAMILY | RING/U-box | 61 | 105 | - | - | |
| Gma08g02145 | 107 | Pfam | Ring finger domain | 62 | 104 | IPR001841 | - | |
| Gma08g02145 | 107 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 15 | 107 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma08g02145 | Gma-Chr8 | 19714823 | 19715146 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma08g02145 | 58 | 104 | C3H Transcription Factor Family | AT3G30460 | 51.064 | 1.83e-12 | 58.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma08g02145 | K16285 | - | gmx:100811790 | 164.081 |