Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02088 ATGGGATATGAAACTAGAAAACTCTCAGATGAGTATGAAGTTTCAGATGTCTTGGGAAGAGGTGGATTTTCTGTTGTTAGAAAAGGCACCAAAAAAGCAAGCAATGACACCAAAACTCATGTAGCCATCAAAACCCTGAGAAGGGTAGGCACTGCTTCAAACTCCAACAACCATTCTGGATTTCCAAGACCAAAAGGTGGAGAGAAGAGCACAGCAGCTATGATGGGGTTCCCCACATGGAGACAAGTCTCAGTCTCAGATGCCTTGCTCACCAATGAGATTCTTGTGATGAGGAGAATAGTGGAAAAAGTTTCACCACACCCTAATGTGATTGATCTCTATGATGTGCATGAGGACTCAAATGGGGTGCACCTTGTGTTGGAGCTGTGTTCTGGTGGGGAACTGTTTGATAGGATTGTGGCACAAGATAGGTACTCAGAGACTGAAGCTGCAGGTGTGGTTCGGCAGATAGCTTCAGGATTAGAGGCTATTCATAAAGCTAACATTGTCCACAGGGACTTGAAGCCTGAGAATTGCCTCTTCTTGGATGTGAGGAGGGACTCTCCTCTTAAGATCATGGACTTTGGGTTGAGTTCTGTTGAGGAATTCACTGACCCAATTGTTGGTTTGTTTGGATCCATTGATTATGTTTCACCAGAGGCTCTTTCTCAAGGGAAGATAACTACTAAGAGTGACATGTGGTCTCTGGGAGTGATTCTATATATCTTGCTCTCTGGGTATCCACCTTTCATTGCTCAGAATAATCGCCAGAAACAACAAATGATAATGAATGGGAATTTCAGTTTCTATGAGAAGACTTGGAAGGGCATTACCAATTCTGCGAAGCAACTGATTTCAGATCTTCTCACTGTTGATCCTAGTAGAAGACCTAGTGCTCAAGATCTTCTGAGTCATCCATGGGTGGTAGGTGACAAAGCCAAAGATGATGCAATGGACCCTGAGATTGTCTCAAGATTGCAGAGCTTTAACGCTAGGCGCAAACTCCGTGCAGCTGCAATTGCTAGTGTTTGGAGCACCGCAATCTTTCTCAGAACTAAAAAGCTGAAATCCTTGGTAGGAACACATGATCTCACAGAAGAGGAAATTGAAAATCTCAGGATGAGTTTTAAGAAGATATGTGTGAGTGGGGACAATGCCACTCTATCTGAGTTTGAGGAGGTGCTGAGAGCCATGAAATTGTCATCACTGATCCCTCTAGCACCACGTATATTTGACTTGTTTGACAACAACCGTGATGGAACAGTTGACATGAGAGAGATACTATGTGGTTTTTCCAGCTTCAAAAACTCCAAAGGAGATGATGCTCTCCGTTTGTGCTTCCAGATGTATGACACAGATCGATCCGGGTGCATCACCAAGGAAGAAGTAGCATCCATGCTGAGAGCTTTACCAGAAGACTGTCTTCCAGCTGATATCACTGAACCTGGCAAATTGGATGAAATATTTGACCTAATGGATGCCAACAGTGATGGAAAAGTTACATTTGATGAATTCAAAGCTGCTATGCAGAGAGATAGCTCACTCCAAGACGTAGTTCTCTCTTCTCTTCGTCCACAATAG 1581 0.4358 MGYETRKLSDEYEVSDVLGRGGFSVVRKGTKKASNDTKTHVAIKTLRRVGTASNSNNHSGFPRPKGGEKSTAAMMGFPTWRQVSVSDALLTNEILVMRRIVEKVSPHPNVIDLYDVHEDSNGVHLVLELCSGGELFDRIVAQDRYSETEAAGVVRQIASGLEAIHKANIVHRDLKPENCLFLDVRRDSPLKIMDFGLSSVEEFTDPIVGLFGSIDYVSPEALSQGKITTKSDMWSLGVILYILLSGYPPFIAQNNRQKQQMIMNGNFSFYEKTWKGITNSAKQLISDLLTVDPSRRPSAQDLLSHPWVVGDKAKDDAMDPEIVSRLQSFNARRKLRAAAIASVWSTAIFLRTKKLKSLVGTHDLTEEEIENLRMSFKKICVSGDNATLSEFEEVLRAMKLSSLIPLAPRIFDLFDNNRDGTVDMREILCGFSSFKNSKGDDALRLCFQMYDTDRSGCITKEEVASMLRALPEDCLPADITEPGKLDEIFDLMDANSDGKVTFDEFKAAMQRDSSLQDVVLSSLRPQ 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02088 526 CDD EFh 409 468 IPR002048 GO:0005509
Gma08g02088 526 ProSitePatterns EF-hand calcium-binding domain. 493 505 IPR018247 -
Gma08g02088 526 ProSitePatterns Protein kinases ATP-binding region signature. 18 44 IPR017441 GO:0005524
Gma08g02088 526 ProSitePatterns EF-hand calcium-binding domain. 451 463 IPR018247 -
Gma08g02088 526 Gene3D Phosphorylase Kinase; domain 1 4 59 - -
Gma08g02088 526 CDD STKc_CAMK 12 307 - -
Gma08g02088 526 Pfam EF-hand domain pair 441 510 IPR002048 GO:0005509
Gma08g02088 526 ProSiteProfiles Protein kinase domain profile. 12 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g02088 526 SUPERFAMILY EF-hand 352 514 IPR011992 -
Gma08g02088 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Gma08g02088 526 Gene3D Transferase(Phosphotransferase) domain 1 135 330 - -
Gma08g02088 526 CDD EFh 443 510 IPR002048 GO:0005509
Gma08g02088 526 ProSiteProfiles EF-hand calcium-binding domain profile. 402 437 IPR002048 GO:0005509
Gma08g02088 526 PANTHER CALCIUM AND CALCIUM/CALMODULIN-DEPENDENT SERINE/THREONINE-PROTEIN KINASE 12 510 - -
Gma08g02088 526 SUPERFAMILY Protein kinase-like (PK-like) 5 323 IPR011009 -
Gma08g02088 526 Gene3D Phosphorylase Kinase; domain 1 72 134 - -
Gma08g02088 526 SMART efh_1 406 434 IPR002048 GO:0005509
Gma08g02088 526 SMART efh_1 442 470 IPR002048 GO:0005509
Gma08g02088 526 SMART efh_1 484 512 IPR002048 GO:0005509
Gma08g02088 526 ProSitePatterns EF-hand calcium-binding domain. 415 427 IPR018247 -
Gma08g02088 526 PRINTS Recoverin family signature 364 383 - -
Gma08g02088 526 PRINTS Recoverin family signature 410 431 - -
Gma08g02088 526 PRINTS Recoverin family signature 434 453 - -
Gma08g02088 526 PRINTS Recoverin family signature 456 474 - -
Gma08g02088 526 PANTHER SERINE/THREONINE-PROTEIN KINASE 12 510 - -
Gma08g02088 526 Gene3D - 331 520 - -
Gma08g02088 526 Pfam EF hand 411 426 IPR002048 GO:0005509
Gma08g02088 526 SMART serkin_6 12 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g02088 526 ProSiteProfiles EF-hand calcium-binding domain profile. 480 515 IPR002048 GO:0005509
Gma08g02088 526 ProSiteProfiles EF-hand calcium-binding domain profile. 438 473 IPR002048 GO:0005509
Gma08g02088 526 Pfam Protein kinase domain 90 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02088 Gma-Chr8 18820485 18825756 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02088 89 513 EF-hand Containing Proteins AT3G10660 37.071 1.13e-77 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Gma08g02088 Pkinase 2e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02088 K13412 - gmx:100780887 1034.63