Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02059 ATGAAGCTAACAGTGAAGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGATACTGTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAGATAATTACCCATGTGGACAGCAATTGTTGATTCACAATGGCAAGGTTTTGAAAGATGAAACTACATTAGTAGAGAATAAAGTCTCTGAAGATGGCTTTCTTGTTGTTATGCTTAGTAAGAGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAGCCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCTTCTGATCCTCCAGTGCAAACTCAAGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAATGTGTCTGCAGATACCTATGGTCTGGCTGCTTCGAATTTAGTTGCTGGTAGTAATCTTGAGCAGACTATTCAACAAATTATGGACATGGGTGGTGGCAATTGGGACAGAGACACAGTTAGTCGTGCTCTTCGAGCAGCTTATAATAACCCAGAGCGTGCTATAGATTACTTGTATTCTGGAATCCCTGAAGCAGCAGAAGTTGCTGTGCCAGTTCCTCAAACAGCTGGGATTTCTTCTGGAGCAGTTCCTGTAGGACCTAATTCATCTCCCTTAAATATGTTTCCACAGGAGACGATTTCTAGCACTGGTGCTGGACTTGGATCGCTAGACTTCCTTAGAAATAACCCCCAGTTTCAAGCATTGCGTTCAATGGTGCAATCCAATCCACAAATTCTACAGCCTGTGCTTCAGGAACTTGGTAAGCAGAATCCTGGTCTTTTAAGACTGATTCAAGAGCATCATGGGGAGTTTCTGCAGTTGATAAATGAACCTGTTGATGGTTCTGAAGGAGATATATTTGAGCAGCCCGAGCAAGACATGCCCCATGCCATCAATGTGACTCCAGCGGAGCAGGAGGCAATTGGAAGGCTCGAGGCTATGGGATTTGATAGAGCCTCGGTGATAGAGGCATTTTTGGCATGTGACCGTGATGAGCAATTGGCAGCCAACTATTTATTGGAGAATGCTGGAGACTTTGAGGATTAA 1092 0.4405 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLVENKVSEDGFLVVMLSKSKTSGSAAASSVQPASNPPTTVSTSNSTPPSDPPVQTQAANNSTSSTDAPTTNVSADTYGLAASNLVAGSNLEQTIQQIMDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGISSGAVPVGPNSSPLNMFPQETISSTGAGLGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPGLLRLIQEHHGEFLQLINEPVDGSEGDIFEQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02059 363 Gene3D - 228 294 IPR036353 GO:0003684|GO:0006289|GO:0043161
Gma08g02059 363 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 362 - -
Gma08g02059 363 SUPERFAMILY XPC-binding domain 235 301 IPR036353 GO:0003684|GO:0006289|GO:0043161
Gma08g02059 363 Gene3D - 310 358 - -
Gma08g02059 363 PANTHER UBIQUITIN RECEPTOR RAD23A-RELATED 1 362 - -
Gma08g02059 363 SUPERFAMILY Ubiquitin-like 1 89 IPR029071 -
Gma08g02059 363 SMART uba_6 319 356 IPR015940 -
Gma08g02059 363 SMART uba_6 148 188 IPR015940 -
Gma08g02059 363 Pfam UBA/TS-N domain 319 354 IPR015940 -
Gma08g02059 363 Pfam UBA/TS-N domain 148 186 IPR015940 -
Gma08g02059 363 CDD UBA1_Rad23_plant 142 191 - -
Gma08g02059 363 Pfam XPC-binding domain 238 293 IPR015360 GO:0003684|GO:0006289|GO:0043161
Gma08g02059 363 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Gma08g02059 363 SUPERFAMILY UBA-like 298 360 IPR009060 GO:0005515
Gma08g02059 363 Gene3D - 141 191 - -
Gma08g02059 363 Gene3D - 1 80 - -
Gma08g02059 363 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Gma08g02059 363 SMART CBM 236 279 IPR006636 -
Gma08g02059 363 SMART ubq_7 1 75 IPR000626 GO:0005515
Gma08g02059 363 TIGRFAM rad23: UV excision repair protein Rad23 1 362 IPR004806 GO:0006289
Gma08g02059 363 PRINTS DNA repair protein Rad23 signature 264 286 IPR004806 GO:0006289
Gma08g02059 363 PRINTS DNA repair protein Rad23 signature 313 329 IPR004806 GO:0006289
Gma08g02059 363 PRINTS DNA repair protein Rad23 signature 330 344 IPR004806 GO:0006289
Gma08g02059 363 PRINTS DNA repair protein Rad23 signature 345 360 IPR004806 GO:0006289
Gma08g02059 363 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 146 189 IPR015940 -
Gma08g02059 363 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 317 357 IPR015940 -
Gma08g02059 363 CDD Ubl_Rad23 1 74 - -
Gma08g02059 363 SUPERFAMILY UBA-like 145 196 IPR009060 GO:0005515
Gma08g02059 363 MobiDBLite consensus disorder prediction 82 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02059 Gma-Chr8 18483067 18489612 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02059 K10839 - gmx:100819019 686.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g02059 08 18483067 18489612 Gma08g02059 08 18483067 18489612 ECH
Gma07g00025 07 221325 227889 Gma08g02059 08 18483067 18489612 GST
Gma13g03329 13 47240649 47245578 Gma08g02059 08 18483067 18489612 PCT
Gma15g00021 15 206620 214585 Gma08g02059 08 18483067 18489612 PCT
Gma08g02059 08 18483067 18489612 Gma13g03329 13 47240649 47245578 PCT
Gma08g02059 08 18483067 18489612 Gma15g00021 15 206620 214585 PCT