Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02056 ATGAGGCCGATGCAACTGCCACCGCCTTCCGCTTCCGGGGCCAACCCTGCCCCTGCAACCACCAACAACAACAACAAGGAGCAGCGTCCCCAGCGCCGCCGCAAGGACCTCACGCTGCCGCTGCCGCAGCGAGACACCAACTTGGCGGTGCCGCTTCCTCTGCCGCCATCGACGGCGCCTGCTGCGGCGGCGCAGCAGGTGATCCCTTTCTCGGAGCTGGAGAGACTGAACCGCATCGGGAGCGGGAGCGGCGGGACGGTGTACAAGGTGGTCCACCGCACGAGCGGGCGCGTGTACGCGCTGAAGGTGATATACGGTCACCACGAGGAGTCGGTGCGGCGGCAGATCCACCGGGAAATCCAGATCCTCCGTGACGTGGACGATGCGAACGTGGTGAAGTGTCACGAGATGTACGATCAGAACAGCGAAATCCAGGTGCTGCTGGAGTTCATGGACGGAGGTTCTCTGGAGGGGAAACACATCACGCAGGAGCAGCAGCTGGCAGATCTGTCTCGGCAGATTCTTAGGGGGCTGGCGTACCTGCACCGGCGGCACATCGTCCACAGGGACATCAAGCCGTCGAATCTGCTTATAAACTCGCGGAAGCAGGTGAAGATCGCTGACTTCGGGGTGGGTCGGATACTGAATCAGACGATGGATCCGTGCAATTCGTCGGTGGGGACGATCGCCTACATGAGTCCGGAGAGGATCAATACGGACATAAACGACGGGCAATACGACGCGTACGCAGGGGACATATGGAGCTTTGGGGTTAGCATACTGGAGTTCTACATGGGAAGGTTCCCCTTCGCGGTTGGGAGGCAGGGCGATTGGGCCAGTCTCATGTGCGCCATTTGTATGTCTCAGCCTCCCGAGGCTCCTCCTTCTGCTTCCCCTCACTTCAAGGACTTCATCTTGCGCTGTCTTCAGCGCGATCCCTCTCGCCGCTGGTCTGCTTCCAGGTTGCTCGAACACCCCTTCATTGCTCCGCCGCTGCCCAACCACAATCAGACTCCTCCAAACCTCCATCAGCTACTCCCTCCTCCGCCAAGGCCTCTTCCCTCCTAG 1068 0.6067 MRPMQLPPPSASGANPAPATTNNNNKEQRPQRRRKDLTLPLPQRDTNLAVPLPLPPSTAPAAAAQQVIPFSELERLNRIGSGSGGTVYKVVHRTSGRVYALKVIYGHHEESVRRQIHREIQILRDVDDANVVKCHEMYDQNSEIQVLLEFMDGGSLEGKHITQEQQLADLSRQILRGLAYLHRRHIVHRDIKPSNLLINSRKQVKIADFGVGRILNQTMDPCNSSVGTIAYMSPERINTDINDGQYDAYAGDIWSFGVSILEFYMGRFPFAVGRQGDWASLMCAICMSQPPEAPPSASPHFKDFILRCLQRDPSRRWSASRLLEHPFIAPPLPNHNQTPPNLHQLLPPPPRPLPS 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02056 355 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 29 349 - -
Gma08g02056 355 CDD PKc_MAPKK_plant_like 71 328 - -
Gma08g02056 355 ProSiteProfiles Protein kinase domain profile. 73 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g02056 355 Gene3D Transferase(Phosphotransferase) domain 1 153 338 - -
Gma08g02056 355 MobiDBLite consensus disorder prediction 332 355 - -
Gma08g02056 355 Pfam Protein kinase domain 74 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g02056 355 MobiDBLite consensus disorder prediction 1 45 - -
Gma08g02056 355 Gene3D Phosphorylase Kinase; domain 1 58 152 - -
Gma08g02056 355 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4 29 349 - -
Gma08g02056 355 MobiDBLite consensus disorder prediction 329 355 - -
Gma08g02056 355 SUPERFAMILY Protein kinase-like (PK-like) 70 350 IPR011009 -
Gma08g02056 355 SMART serkin_6 73 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g02056 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Gma08g02056 355 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02056 Gma-Chr8 18446533 18448060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02056 1 344 MAP Kinase Kinase Gene Family AT1G51660 67.218 3.79e-171 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Gma08g02056 Pkinase 5.2e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02056 K13413 - gmx:100818488 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g02056 08 18446533 18448060 Gma08g02056 08 18446533 18448060 ECH
Gma07g00028 07 253290 255321 Gma08g02056 08 18446533 18448060 GST