Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02039 ATGGATGGTATTCATGGGGGTGATTCTCGGATACACATAACTGATGGACAGCATCCTATACACGTGCCATATGTGCAAGAACACGAGCATCATGGACTCCACCATATAAGCAATGGGAATGGGATAGATGATGATCATAATGATGGTGGTGATACTAACTGTGGTGGAAGTGAGAGTATGGAAGGTGAAGTCCCCTCCAACCATGGAAATCTCCCTGACAATCATGCTGTAATGATGGATCAAGGGGGTGATTCTGGGGATCAGCTTACGTTGTCTTTTCAGGGCCAGGTTTATGTCTTTGACTCCGTGTCACCAGAAAAGGTTCAAGCTGTACTACTGTTACTGGGAGGCCGCGAAATACCTCCAACTATGCCTGCCATGCCAGTATCTCCTAACCATAATAACCGGGGATATACTGGTACTCCGCAAAAATTCAGTGTCCCTCAGAGATTAGCTTCATTGATTAGGTTTCGTGAAAAGCGGAAGGAACGAAATTATGACAAAAAAATTCGCTATACTGTTCGTAAAGAAGTAGCATTAAGGATGCAAAGAAATAAAGGTCAGTTTACATCTTCCAAGTCCAATAATGATGAATCTGCATCAAATGCCACAAATTGGGGGATGGATGAAAACTGGACAGCAGACAATAGTGGATCCCAGCAGCAAGATATTGTTTGTAGGCACTGTGGCATCAGTGAGAAGAGTACACCAATGATGCGACGCGGGCCTGAAGGGCCAAGGACCCTCTGCAATGCTTGTGGTCTTATGTGGGCAAATAAGGGAATCCTGAGGGACCTATCAAGGGCGGCACCCTTATCTGGGACTATCAAGAATGAGAATAAAAGTTTAGAGGCCAACCAGATAGTCCATAGAGTTGCAGGAGAAGCTGATGATTCATCATGA 903 0.4485 MDGIHGGDSRIHITDGQHPIHVPYVQEHEHHGLHHISNGNGIDDDHNDGGDTNCGGSESMEGEVPSNHGNLPDNHAVMMDQGGDSGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREIPPTMPAMPVSPNHNNRGYTGTPQKFSVPQRLASLIRFREKRKERNYDKKIRYTVRKEVALRMQRNKGQFTSSKSNNDESASNATNWGMDENWTADNSGSQQQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGILRDLSRAAPLSGTIKNENKSLEANQIVHRVAGEADDSS 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02039 300 Pfam GATA zinc finger 226 261 IPR000679 GO:0006355|GO:0043565
Gma08g02039 300 MobiDBLite consensus disorder prediction 33 74 - -
Gma08g02039 300 ProSiteProfiles Tify domain profile. 82 117 IPR010399 -
Gma08g02039 300 SMART tify_2 82 117 IPR010399 -
Gma08g02039 300 Gene3D - 216 283 IPR013088 GO:0006355|GO:0008270
Gma08g02039 300 ProSiteProfiles GATA-type zinc finger domain profile. 220 279 IPR000679 GO:0006355|GO:0043565
Gma08g02039 300 ProSiteProfiles CCT domain profile. 150 192 IPR010402 GO:0005515
Gma08g02039 300 Pfam tify domain 87 116 IPR010399 -
Gma08g02039 300 MobiDBLite consensus disorder prediction 33 51 - -
Gma08g02039 300 SMART GATA_3 220 273 IPR000679 GO:0006355|GO:0043565
Gma08g02039 300 PANTHER GATA TRANSCRIPTION FACTOR 28 5 287 - -
Gma08g02039 300 MobiDBLite consensus disorder prediction 185 219 - -
Gma08g02039 300 ProSitePatterns GATA-type zinc finger domain. 226 253 IPR000679 GO:0006355|GO:0043565
Gma08g02039 300 CDD ZnF_GATA 225 281 IPR000679 GO:0006355|GO:0043565
Gma08g02039 300 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 273 - -
Gma08g02039 300 Pfam CCT motif 150 192 IPR010402 GO:0005515
Gma08g02039 300 PANTHER GATA TRANSCRIPTION FACTOR 28 5 287 IPR045280 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02039 Gma-Chr8 18325554 18331019 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02039 1 299 Tify Gene Family AT1G51600 62.215 6.76e-133 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma08g02039 CCT 3.6e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02039 - - gmx:100812262 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g02039 08 18325554 18331019 Gma08g02039 08 18325554 18331019 ECH