Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02029 ATGCGTGTGCAGTGCAGTGGTCCTCTCTCGTTTTTAATTTTCATGGCGAAGAAATCACAGAAAAGCCTCAAAAACAACAATAACAACAACACCACTAGGAAGCGCACACGCAAAAGCGTCCCAAGAGACTCACCTCCTCAACGAAGCTCAATCTATAGGGGTGTCACAAGGCATCGATGGACTGGTCGATACGAGGCTCATTTGTGGGATAAGAATTGCTGGAATGAATCACAGAGCAAGAAAGGAAGACAAGTATATCTAGGGGCATATGATGATGAAGAAGCCGCAGCACGTGCCTATGACTTGGCAGCATTGAAGTACTGGGGCCAAGATACCATTCTCAATTTTCCATTATCAAATTATGAGGAGAAGCTCAAGGAGATGGAAGGCCAGTCAAAAGAAGAATATATTGGATCCTTGCGAAGAAAAAGCAGTGGGTTCTCTCGAGGAGTTTCAAAATACAGAGGCGTAGCAAGACACCACCATAACGGAAGATGGGAAGCTCGAATTGGAAGGGTCTTTGGCAACAAATATCTATACCTTGGAACTTACGCTACACAAGAAGAAGCAGCCGCAGCATATGACATGGCAGCAATAGAATACAGAGGACTTAACGCCGTTACAAACTTTGACCTGAGCCGTTATATCAATTGGCCACGTCCTAAAACAGAAGAAAATCATCAAAATACTCCTAGCAACCAAAATGTAAACTCTAATGCTGAACTCGAGCTAGGTTCGGCTAGTGACGAGATCACAGAAGAGGGCGTAGCACGATCTTCAGAGTCAGAGTCAAATCCTTCTCGTCGCACATTCCCTGAAGACATTCAAACAATTTTTGAAAATAATCAAGATTCAGGCATCTACATTGAAAATGATGATATCATTTTTGGTGACTTGGGCTCGTTTGGTGCACCAATTTTTCATTTCGAACTTGATGTTTAG 942 0.431 MRVQCSGPLSFLIFMAKKSQKSLKNNNNNNTTRKRTRKSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQSKKGRQVYLGAYDDEEAAARAYDLAALKYWGQDTILNFPLSNYEEKLKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAAAYDMAAIEYRGLNAVTNFDLSRYINWPRPKTEENHQNTPSNQNVNSNAELELGSASDEITEEGVARSSESESNPSRRTFPEDIQTIFENNQDSGIYIENDDIIFGDLGSFGAPIFHFELDV 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02029 313 MobiDBLite consensus disorder prediction 250 274 - -
Gma08g02029 313 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 15 241 - -
Gma08g02029 313 MobiDBLite consensus disorder prediction 258 274 - -
Gma08g02029 313 ProSiteProfiles AP2/ERF domain profile. 51 117 IPR001471 GO:0003700|GO:0006355
Gma08g02029 313 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 15 241 - -
Gma08g02029 313 SUPERFAMILY DNA-binding domain 50 119 IPR016177 GO:0003677
Gma08g02029 313 Gene3D AP2/ERF domain 152 213 IPR036955 GO:0003700|GO:0006355
Gma08g02029 313 Gene3D AP2/ERF domain 51 119 IPR036955 GO:0003700|GO:0006355
Gma08g02029 313 Pfam AP2 domain 152 203 IPR001471 GO:0003700|GO:0006355
Gma08g02029 313 Pfam AP2 domain 51 109 IPR001471 GO:0003700|GO:0006355
Gma08g02029 313 SMART rav1_2 51 123 IPR001471 GO:0003700|GO:0006355
Gma08g02029 313 SMART rav1_2 153 217 IPR001471 GO:0003700|GO:0006355
Gma08g02029 313 SUPERFAMILY DNA-binding domain 152 213 IPR016177 GO:0003677
Gma08g02029 313 MobiDBLite consensus disorder prediction 22 50 - -
Gma08g02029 313 ProSiteProfiles AP2/ERF domain profile. 153 211 IPR001471 GO:0003700|GO:0006355
Gma08g02029 313 CDD AP2 152 213 IPR001471 GO:0003700|GO:0006355
Gma08g02029 313 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Gma08g02029 313 PRINTS Ethylene responsive element binding protein signature 193 213 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02029 Gma-Chr8 18263549 18267395 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02029 47 215 AP2-EREBP Transcription Factor Family AT5G57390 74.556 6.54e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gma08g02029 AP2 4.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02029 K09285 - gmx:100819898 602.823