Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02016 ATGTTTGATTCTGGTTACAAGTCACAGTATATTGGAGGCCAGAAGGAGAAGTTCGTAAGGTTGGATGATCTGGATTCGAATTGTTCTATGCCATCAAGCTCAAGGGGGATGAAAAAATTAAGATTCAATTTAGATTCTCTGCCTATTCCTCTTCCTGGTCGTGGAAGAAAAAGAGCATCGAAATCGTTTAGGCAAGGAATGAAGAAGAGTTCAGATGGACTAAAGACATTTGGAAGATCACTGAAGACTGGAGTGACTACTTGGGCAGTGTTCCCAGAAGATCTTAAAGTGTCTGAGAAAAAAGTATTTGATCCTCAAGATAAGAACCTTCTGTATTGGAACAAGTTTTTTGAGATTCTGTGCATTGTTTCTGTAGCATGCGATCCCTTCTTCTTTTACCTTCCTTATTTCAACCACAAGTCATTTTGCCTCGCCATAGATAACAACCTAGCAAGTTTTGCTGTCCCAATGAGAACAATATGTGATTTCATTTATCTCCTCCGCATAAGTTTTCAATTCCGCACTGCTTACATTGCTCCTTCATCTCGGGTATTTGGACGAGGTGAACTTGTTATAGATCCTACAAAGATTGCCAAGAGATATTTACAACGTTACTTCATCATTGACTTCATTTCTGTGCTGCCTATCCCACAGATTATAGTGTGGAAATATCTATACAGATCAGGACGTGTAGAAGTACTGGAAACAAAAACGGCACTGTTGAGAATTGTGATCCTGCAATATTTTCCAAGATTTCTACGCTTTTTACCTTTAGCTTCAGAAGTTAAAAGAACAGCGGGTGTTTTTTCTGAGAACGCATTGCTCGGTGCCATGTACTATTTGATCTGGTATATGCTTGCTAGTCATATAACTGGCTCTGTCTGGTACTTACTAGCCATTGAACGTAATGACACCTGCTGGAAGGATGCTTGTAAAAAAGTTGAAGGATGCAATACACATTTCTTGTACTGTTCGAATTCGAACAAGCATATGTCAGGGTATGAATCTTGGAGAAATGTCAGCGAGACTGTTCTGAAAAGTCGTTGCTTTGTTGAGGATGATTCCTCAGAATTTAACTATGGAATCTTCTCTCAAGCTATACAGTCTGATATTGTTGCTTCCGTAGAAGTTTTTCCTAAATTCTGTTACTGTTTGTGGTGGGGCCTTCAAAACTTGAGTACACTTGGTCAGGGACTTCTAACCAGTACCTACCCTAAAGAGGTCTTGTTTTCCATAGTAATAGCTATTATGGGGCTTATCCTTTTTGCTCTTCTGATTGGAAACATGCAGACCTACCTTCAATCAATGTCAGTTCGTCTTGAGGAAATGAGGATCAAAAGACGCGACTCTGAGCAGTGGATGCATCATCGCTTGCTTCCTCCGGAGCTAAGGGAAAGAGTGAGACGCTATGACCAATACAAGTGGCTGAACACCCGAGGAGTAGATGAAGAGAGCTTAGTTCAGAGTCTTCCAAAAGATCTCAGGAGAGATATCAAACGGCATCTTTGTTTGAATTTAGTCAGAAGGGTTCCTCTCTTTGCCAACATGGATGAACGTTTGCTTGATGCTATATGTGAGCGACTGAAGCCTAGTTTATATACAGAGGGAACTTACATAGTGAGGGAAGGGGATCCAGTTAATGAGATGCACTTCATCATACGTGGCCGTCTAGAGAGTGTCACTACAGATGGTGGAAGAAGTGGATTTTTCAACAGAGGTCTTCTGAAGGAAGCTGACTTCTGTGGAGAAGAGCTACTAACATGGGCATTAGACCCCAAATCTGCTGCTAGCTTGCCAACATCGACGAGGACGGTGAAAGCTATAAATGAGGTTGAGGCATTTGCTTTGGAAGCAGAGGAGTTGAAGTTTGTTGCTTCCCAGTTTAGGCACATTCACAGCAGACAGGTTCAGCACACCTTCCGTTTCTATTCGCAGCAGTGGAGAACATGGGCTGCTATCTACATTCAAGCTGCGTGGAGGCGGCATTACAGGAGAAAGATTGCAGAACAGCGCAGGAGGGAGGAAGAAGAATTCTGTGACTCTGATTATGAAAACGGTGATGGTTCAGCAAGCGCCTTGGTCAAGCGTAGAGATACTTCTGTTTCCCCTTCAGGGCTTAGACTTGGAACAACCGTCTATGCTTCTCGCTTTGCTGCTAATGCACTTCATGGTCATAGGCTTCGTGGTTCAAGTTCGAGGGAGACGATCAAACTCCAAAAGCCCCCGGAACCTGACTTTGGTAATCTTGATGATGACTGA 2259 0.4263 MFDSGYKSQYIGGQKEKFVRLDDLDSNCSMPSSSRGMKKLRFNLDSLPIPLPGRGRKRASKSFRQGMKKSSDGLKTFGRSLKTGVTTWAVFPEDLKVSEKKVFDPQDKNLLYWNKFFEILCIVSVACDPFFFYLPYFNHKSFCLAIDNNLASFAVPMRTICDFIYLLRISFQFRTAYIAPSSRVFGRGELVIDPTKIAKRYLQRYFIIDFISVLPIPQIIVWKYLYRSGRVEVLETKTALLRIVILQYFPRFLRFLPLASEVKRTAGVFSENALLGAMYYLIWYMLASHITGSVWYLLAIERNDTCWKDACKKVEGCNTHFLYCSNSNKHMSGYESWRNVSETVLKSRCFVEDDSSEFNYGIFSQAIQSDIVASVEVFPKFCYCLWWGLQNLSTLGQGLLTSTYPKEVLFSIVIAIMGLILFALLIGNMQTYLQSMSVRLEEMRIKRRDSEQWMHHRLLPPELRERVRRYDQYKWLNTRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEGTYIVREGDPVNEMHFIIRGRLESVTTDGGRSGFFNRGLLKEADFCGEELLTWALDPKSAASLPTSTRTVKAINEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRRHYRRKIAEQRRREEEEFCDSDYENGDGSASALVKRRDTSVSPSGLRLGTTVYASRFAANALHGHRLRGSSSRETIKLQKPPEPDFGNLDDD 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02016 752 Gene3D Helix hairpin bin 439 503 - -
Gma08g02016 752 SUPERFAMILY cAMP-binding domain-like 442 632 IPR018490 -
Gma08g02016 752 CDD CAP_ED 512 643 IPR000595 -
Gma08g02016 752 MobiDBLite consensus disorder prediction 725 752 - -
Gma08g02016 752 SUPERFAMILY Voltage-gated potassium channels 105 434 - -
Gma08g02016 752 MobiDBLite consensus disorder prediction 675 696 - -
Gma08g02016 752 Gene3D Jelly Rolls 510 630 IPR014710 -
Gma08g02016 752 Gene3D - 113 437 - -
Gma08g02016 752 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 12 748 - -
Gma08g02016 752 Pfam Cyclic nucleotide-binding domain 533 622 IPR000595 -
Gma08g02016 752 SMART cnmp_10 512 643 IPR000595 -
Gma08g02016 752 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 12 748 - -
Gma08g02016 752 ProSiteProfiles cAMP/cGMP binding motif profile. 512 609 IPR000595 -
Gma08g02016 752 MobiDBLite consensus disorder prediction 727 746 - -
Gma08g02016 752 Pfam Ion transport protein 112 439 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gma08g02016 752 ProSiteProfiles IQ motif profile. 648 677 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02016 Gma-Chr8 18156529 18160581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02016 6 746 Ion Channels AT1G15990 67.776 0.0 997
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02016 K05391 - gmx:100815308 1409.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g02016 08 18156529 18160581 Gma08g02016 08 18156529 18160581 ECH
Gma07g00214 07 1762854 1766969 Gma08g02016 08 18156529 18160581 GST