Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01999 ATGCGTGTTTCAAGGCCCAATAGAACCCAATTCAGAGCAATTCGGCGCAATCGTCTTCTGCTTCAAGGAAGGAGAGCTTGTTATTCTCTATCAACAAGGAAAATGTCAGGTGAAGAGGTTGTTGTTGCAGCTGAGCCAGCTGCTGCCATCCCAGGCGAGCCTATGGATATCATGACTGCCTTGCAACTTGTGCTCAGAAAATCTCTGGCTTATGGTGGTCTTGCACGAGGCCTTCACGAAGGGGCAAAAGTGATTGAGAAGCATGCTGCACAACTCTGTGTTCTAGCAGAAGACTGTGACCAGCCTGACTATGTTAAACTGGTTAAGGCCCTTTGTGCAGAGCACAATGTTAGCCTGCTGACAGTTCCGAGTGCAAAGACCCTTGGAGAATGGGCTGGTTTGTGCAAGATTGATTCCGAAGGAAAAGCTAGGAAGGTTACTGGTTGCTCCTGTGTGGTTGTGAAGGATTTTGGTGAGGAGCATGAAGCCTATAACGTCGTTCTGCAGCATGTGAAATCTCAATGA 525 0.48 MRVSRPNRTQFRAIRRNRLLLQGRRACYSLSTRKMSGEEVVVAAEPAAAIPGEPMDIMTALQLVLRKSLAYGGLARGLHEGAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSQ 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01999 174 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 60 153 IPR004038 -
Gma08g01999 174 PANTHER 40S RIBOSOMAL PROTEIN S12 35 174 IPR000530 GO:0003735|GO:0005840|GO:0006412
Gma08g01999 174 PRINTS Ribosomal protein S12E family signature 78 94 IPR000530 GO:0003735|GO:0005840|GO:0006412
Gma08g01999 174 PRINTS Ribosomal protein S12E family signature 119 140 IPR000530 GO:0003735|GO:0005840|GO:0006412
Gma08g01999 174 PRINTS Ribosomal protein S12E family signature 144 157 IPR000530 GO:0003735|GO:0005840|GO:0006412
Gma08g01999 174 PRINTS Ribosomal protein S12E family signature 64 77 IPR000530 GO:0003735|GO:0005840|GO:0006412
Gma08g01999 174 PANTHER 40S RIBOSOMAL PROTEIN S12 35 174 - -
Gma08g01999 174 ProSitePatterns Ribosomal protein S12e signature. 60 78 IPR000530 GO:0003735|GO:0005840|GO:0006412
Gma08g01999 174 SUPERFAMILY L30e-like 54 172 IPR029064 -
Gma08g01999 174 Gene3D - 39 174 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01999 Gma-Chr8 17988093 17990705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01999 50 174 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 74.400 1.12e-65 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01999 K02951 - gmx:100305687 265.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00228 07 1883413 1885369 Gma08g01999 08 17988093 17990705 GST
Gma15g00039 15 346891 347481 Gma08g01999 08 17988093 17990705 PCT
Gma08g01999 08 17988093 17990705 Gma15g00039 15 346891 347481 PCT