Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01988 ATGGATAATCTCGAAAAACTGAAGAATGAAAATATCGATCTCGAGAAAATACCTTTGGAGCAAGTCTTCGCACAGTTAAATTGTTCGGAGGAGGGTCTCACAACTGAGGAAGGCCTAAAGAGGTTGCAAGTTTTTGGGCCCAACAATAAGGTGCTGAAATTCTTGGGGTTTATGTGGAATCCTCTGTCATGGGTCATGGAAGCGGCTGCAGTCATGGCGATTGCAATGGCCAATGGAGGGGGCAAGCCACCAGATTGGCAGGACTTCGTGGGAATATTAGCATTGCTTGTTATCAACTCCACCATTAGTTTTATTGAAGAAAATAATGCCGGCAATGCTGCTGCTGCACTTATGGCAGGTCTTGCTCCCAAAACCAAGGTTCTAAGGGATGGAAAGTGGACCGAGGAGGATGCGGCTATATTGGTACCAGGAGACATCATCAGCATCAAGTTAGGAGACATCATACCAGCTGATGCTCGTCTCTTGGATGGTGATCCAATCAAGATCGATCAATCTGCACTTACTGGTGAATCATTGCCTGTTTCAAAGAATCCTGGTGATGAAGTCTTCTCCGGCTCTACCGTTAAGCAAGGAGAGCTTGAGGCTGTTGTAATCGCTACTGGGGTACACACCTTTTTTGGCAAAGCTGCTCACTTAGTGGACAGCACCAACCAAGTAGGGCATTTTCAGAAGGTATTGACAGCCATTGGTAACTTTTGCATTTGCTCAATAGCTGTGGGTATGGTCATAGAGATCATTGTCATGTACCCAATTCAGCACCGACCTTATAGGAGTGGAATTGACAATCTATTGGTGCTTCTCATTGGAGGGATTCCTATTGCCATGCCAACGGTCTTGTCAGTGACTATGGCTATTGGTTCTCATCGGCTGTCCCAACAAGGTGCTATCACTAAGAGGATGACCGCCATTGAGGAGATGGCTGGGATGGATGTTTTATGCAGTGACAAGACTGGCACTCTAACGCTGAACAAGCTCACTGTAGACAAGACTCTGATTGAGGTTTTTGCAAAAGATGCTGACAAGGACATTGTAATTTTACTAGGAGCTAGAGCGTCTAGGGTAGAGAACCAAGATGCTATTGATGCTTGCATTGTCGGAATGTTGGGTGACCCGAAGGAGGCCAGAGATGGCATCAAAGAGGTGCACTTCTTACCCTTTAATCCAGTGGACAAGCGTACGGCCATCACATATATAGACATCAATGGCAATTGGCACCGAGCAAGCAAAGGGGCACCAGAGCAGATTATACATCTCTGCAATGTCCGGGAAGATGTGAAGAAGGAAGCTCATGCTATTATCGGAAAATTTGCTGATCGTGGTCTTCGTTCCCTTGCTGTTGCCAAGCAAGAAGTTCCAGAGAAGACCAAGGAGAGTCCAGGAGGACCGTGGCAGTTTGTGGGTCTGTTGCCTCTCTTTGACCCACCTAGGCATGACAGTGCAGAGACCATTCGCCGTGCTCTCCATCTTGGAGTGAACGTTAAAATGATTACAGGCGATCAGCTAGCTATTGGAAAAGAGACTGCTCGCAGGCTTGGCATGGGAAGTAACATGTACCCTTCTTCCTCCCTCCTTGGCGATCACAAGGATGAGTCTATTGCTGCACTTCCAGTTGATGAGCTTATTGAAAAGGCTGATGGCTTTGCTGGTGTCTTTCCTGAGCACAAATATGAGATTGTGAAGATACTCCAGGATAGAAAGCACATATGCGGGATGACTAGAGATGGTGTCAATGATGCTCCTGCCCTAAAAAAGGCAGATATTGGGATTGCAGTGGCTGATGCAACCGATGCAGCTCGAGGTGCATCCGACATAGTTCTGACAGAGCCTGGCCTGAGTGTGATTGTGAGTGCAGTCTTGACAAGCAGAGCCATTTTCCAGAGAATGAAGAACTACACCATCTATGCTGTTTCTATTACAATCCGAATCGTGCTGGGCTTTTTGCTGCTAGCTCTAATCTGGAAATTTGATTTCTCACCTTTTATGGTTTTGATCATTGCAATACTAAATGACGGAACAATTATGACCATTTCCAAGGACAGAGTGAAGCCATCACCTCGGCCAGATTCATGGAAGTTGAATGAGATTTTTGTCACAGGCATAGTGCTTGGTACCTACCTTGCTATAATGACTGTTGTCTTCTTCTGGGCAGCTCATGCTTCTGATTTCTTCACCGAAAAATTTGGTGTCAGACCTATCAGGAATAACCAGGATGAGCTCACAGCAGCTGTTTACCTTCAAGTGAGTATTGTAAGCCAGGCTCTCATCTTTGTTACTCGGTCTAGGAACTTCTCTTTTCTTGAGCGCCCGGGTCTCTTGCTTGTTACAGCATTTGTAATTGCACAGCTGATTGCCACAATCATAGCTGTCTATGCAAACTGGGGCTTTGCAAGGATGAAAGGAATTGGGTGGGGCTGGGCTGGTGTCATTTGGCTTTACAGCATCATTTTCTACATTCCGTTGGATTTTCTTAAATTCGGCATTCGATATTTTTTGAGTGGCAGGGCATGGAATAATATTACCGAGAATAAGACTGCTTTCACAACAAAGAAGGATTATGGAAAGGAAGAGCGAGAAGCACAATGGGTCACAGCTCAACGCACACTACATGGGTTGAATCCTCCTGAAACAGAACAGATATTTAGTGAAAAGAACAAGTACCGTGAATTGTCTGATATCGCAGATCAGGCTAGGAAACGAGCTGAAGTTGCAAGATTGCGGGAGCTTTACACATTGAAGGGACATGTCGAATCCGTCGTGAAACTCAAGGGACTGGACATTGGTACAATTCAGCAGCATTACACCGTTTGA 2829 0.4571 MDNLEKLKNENIDLEKIPLEQVFAQLNCSEEGLTTEEGLKRLQVFGPNNKVLKFLGFMWNPLSWVMEAAAVMAIAMANGGGKPPDWQDFVGILALLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWTEEDAAILVPGDIISIKLGDIIPADARLLDGDPIKIDQSALTGESLPVSKNPGDEVFSGSTVKQGELEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMVIEIIVMYPIQHRPYRSGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKTLIEVFAKDADKDIVILLGARASRVENQDAIDACIVGMLGDPKEARDGIKEVHFLPFNPVDKRTAITYIDINGNWHRASKGAPEQIIHLCNVREDVKKEAHAIIGKFADRGLRSLAVAKQEVPEKTKESPGGPWQFVGLLPLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIGKETARRLGMGSNMYPSSSLLGDHKDESIAALPVDELIEKADGFAGVFPEHKYEIVKILQDRKHICGMTRDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFLLLALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPRPDSWKLNEIFVTGIVLGTYLAIMTVVFFWAAHASDFFTEKFGVRPIRNNQDELTAAVYLQVSIVSQALIFVTRSRNFSFLERPGLLLVTAFVIAQLIATIIAVYANWGFARMKGIGWGWAGVIWLYSIIFYIPLDFLKFGIRYFLSGRAWNNITENKTAFTTKKDYGKEEREAQWVTAQRTLHGLNPPETEQIFSEKNKYRELSDIADQARKRAEVARLRELYTLKGHVESVVKLKGLDIGTIQQHYTV 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01988 942 PRINTS H+-transporting ATPase (proton pump) signature 579 595 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma08g01988 942 PRINTS H+-transporting ATPase (proton pump) signature 551 567 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma08g01988 942 PRINTS H+-transporting ATPase (proton pump) signature 436 454 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma08g01988 942 PRINTS H+-transporting ATPase (proton pump) signature 610 635 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma08g01988 942 PRINTS H+-transporting ATPase (proton pump) signature 751 772 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma08g01988 942 Pfam Cation transporter/ATPase, N-terminus 16 72 IPR004014 -
Gma08g01988 942 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 92 341 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma08g01988 942 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 554 665 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma08g01988 942 Pfam haloacid dehalogenase-like hydrolase 316 593 - -
Gma08g01988 942 Gene3D - 123 207 - -
Gma08g01988 942 SUPERFAMILY Calcium ATPase, transduction domain A 123 220 IPR008250 -
Gma08g01988 942 SUPERFAMILY Calcium ATPase, transmembrane domain M 12 839 IPR023298 -
Gma08g01988 942 SFLD C1.7: P-type atpase like 302 631 - -
Gma08g01988 942 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 32 797 IPR006534 GO:0008553|GO:0016021|GO:0120029
Gma08g01988 942 Pfam E1-E2 ATPase 122 299 - -
Gma08g01988 942 CDD P-type_ATPase_H 32 832 IPR006534 GO:0008553|GO:0016021|GO:0120029
Gma08g01988 942 Gene3D - 891 942 - -
Gma08g01988 942 Gene3D - 317 616 IPR023214 -
Gma08g01988 942 Gene3D - 332 479 IPR023299 GO:0000166
Gma08g01988 942 SMART Cation_ATPase_N_a_2 13 78 IPR004014 -
Gma08g01988 942 SUPERFAMILY HAD-like 316 626 IPR036412 -
Gma08g01988 942 ProSitePatterns E1-E2 ATPases phosphorylation site. 322 328 IPR018303 -
Gma08g01988 942 PANTHER CALCIUM-TRANSPORTING ATPASE 3 917 - -
Gma08g01988 942 PANTHER ATPASE 9, PLASMA MEMBRANE-TYPE 3 917 - -
Gma08g01988 942 SFLD p-type atpase 302 631 IPR044492 -
Gma08g01988 942 Gene3D - 85 806 - -
Gma08g01988 942 Coils Coil 893 913 - -
Gma08g01988 942 PRINTS P-type cation-transporting ATPase superfamily signature 170 184 - -
Gma08g01988 942 PRINTS P-type cation-transporting ATPase superfamily signature 320 334 - -
Gma08g01988 942 PRINTS P-type cation-transporting ATPase superfamily signature 602 614 - -
Gma08g01988 942 PRINTS P-type cation-transporting ATPase superfamily signature 579 598 - -
Gma08g01988 942 PRINTS P-type cation-transporting ATPase superfamily signature 474 485 - -
Gma08g01988 942 PRINTS P-type cation-transporting ATPase superfamily signature 496 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01988 Gma-Chr8 17873193 17879032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01988 5 942 Primary Pumps ATPases AT3G42640 80.952 0.0 1565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00241 07 2073287 2079183 Gma08g01988 08 17873193 17879032 GST