Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01982 ATGAACGGCGAAATTTTCTTACACGCGCCAACAACCACCACCGCCACCACCACTACTAACTTTTTGCTTCCAAAGCCCGAAACGAAGTCGTCAGAGAAGCTACGCTACGAAACGGCGTTGGAAGGAATCGCCGCGGTCGTAGGAGAACATGTCCTCTTCGGAACGACATCTTCGTCGCATGTTTCGGAGACTCCGAAGAAGACATCGGTGGGCAAGAGCTACCGAGGAGTGCGGAAGCGACCTTGGGGGAGGTGGTCGGCGGAGATACGCGACCGCATCGGGCGGTGCCGCCATTGGCTGGGGACCTTCGACACCGCGGAGGAGGCGGCGCGTGCGTACGACGCGGCGGCGAGGCGCCTGAGGGGGGCGAAGGCGAGAACCAACTTCCAGATACCATCGGTGTTGCCACTTTCTCCGGAAGGGGTTCATGGTGGTGCCGTGAAGCCGAAAACCGCGCGTAACAACGCTAGGAAGTGTTCTTCTGTGGAACAATTGTTCAGTGGGGTGCCTCAACTTCGAAAAGATGATGGTATCGGTGAGAATGGGAATGTGGAGGTGGATTTGAAGTTTGGTGTGAACTTTGGCTTTTACAAACACTAG 600 0.565 MNGEIFLHAPTTTTATTTTNFLLPKPETKSSEKLRYETALEGIAAVVGEHVLFGTTSSSHVSETPKKTSVGKSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGAKARTNFQIPSVLPLSPEGVHGGAVKPKTARNNARKCSSVEQLFSGVPQLRKDDGIGENGNVEVDLKFGVNFGFYKH 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01982 199 Pfam AP2 domain 73 122 IPR001471 GO:0003700|GO:0006355
Gma08g01982 199 Gene3D AP2/ERF domain 72 131 IPR036955 GO:0003700|GO:0006355
Gma08g01982 199 ProSiteProfiles AP2/ERF domain profile. 73 130 IPR001471 GO:0003700|GO:0006355
Gma08g01982 199 SUPERFAMILY DNA-binding domain 73 131 IPR016177 GO:0003677
Gma08g01982 199 CDD AP2 72 131 IPR001471 GO:0003700|GO:0006355
Gma08g01982 199 Coils Coil 106 126 - -
Gma08g01982 199 SMART rav1_2 73 136 IPR001471 GO:0003700|GO:0006355
Gma08g01982 199 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF084 31 185 - -
Gma08g01982 199 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 31 185 - -
Gma08g01982 199 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Gma08g01982 199 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01982 Gma-Chr8 17826614 17827213 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01982 16 136 AP2-EREBP Transcription Factor Family AT1G80580 56.835 1.94e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma08g01982 AP2 2.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01982 - - gmx:102667667 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01982 08 17826614 17827213 Gma08g01982 08 17826614 17827213 ECH
Gma07g00250 07 2158709 2159344 Gma08g01982 08 17826614 17827213 GST