Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01980 ATGGGGGAGCCATGCCAAAAATATTGGTTTTCTGATATGGAAATACAAGATATTGATTTCTTTAATCAAAGCCACAACCACAAGATTGAGTCACTTGATCATGATGAGGATCAGATCTTTCGAGAGATCATGCATCAGCCAGTTTTCTCTTCAGACAGCGATACTCACTTGCCCAGCAAAATTCAAAGTAAATCAATCCACGGTGGTGTTAGTAGTGGTTATAATACTTACACAGTCCTCGCCAACAACAAGAGTAATAATAGCAACCTTGCGATGAAGAGCAACACCTCCAACTTCATCTTCTCATCACAATTACATGCACCACCAGAGAAATTACCTGCCACAGCCAGTACTTCTCCAACCGCATACATTCTTTCTTTTGATGACTCCACCGTAGTTGCGGCTACGCGCCAAAACTACGGTGAAAAACAGCCCTACCACCAGGAAGTGGTGCTAGGGAGTGGTGGCGCATGTCTTCCCTCAAAAGGGGTCTCAGAAGGACACGACTTTGAACCTAAGGCCAAGCCAACAACAAAGAGAAGTAGAAGCTCTGCGGAGACCCTAGTCCATATAATGACAGAGAGAAAGAGAAGACGGGAACTCACAGAGAGATTCATTGCACTTTCAGCCACCATACCTGGCTTAAAGAAGATTGACAAGGCCACTATACTTAGTGAAGCAATCACTCATGTGAAAAGACTTAAAGAACGTGTAAGGGAGCTAGAAGAACAACGTAAGAAGACAAGGGTAGAGTCAGTGTCATTTGTTCATCAGAGATCCCACATTGCAACTGTCAAAGGCACCACCTCTGGTGCAATGAACTCTGATGAATGCTGTAGAACCAACGAAGCACTCCCTACAGTGGAAGCAAGAGTGTTTAAAAAAGATGTACTCCTCCGGATTCACTGCAAGATACAAAGTGGCATTTTGATCAAAATTTTGGACCATCTTAATAGTCTTGATCTCTCCACAATCAGCAACAGTGTAATGCCATTTGGAAGTTCAACTCTAGACATCAGCATTATTGCTCAGATGGGTGACAACTTCAACGTAACAACAATGAACGATCTAGTGAAAAATCTGAGAATGACTCTCTCGCAGTCATCTGAAGTACAAGTACAACAATGA 1128 0.4291 MGEPCQKYWFSDMEIQDIDFFNQSHNHKIESLDHDEDQIFREIMHQPVFSSDSDTHLPSKIQSKSIHGGVSSGYNTYTVLANNKSNNSNLAMKSNTSNFIFSSQLHAPPEKLPATASTSPTAYILSFDDSTVVAATRQNYGEKQPYHQEVVLGSGGACLPSKGVSEGHDFEPKAKPTTKRSRSSAETLVHIMTERKRRRELTERFIALSATIPGLKKIDKATILSEAITHVKRLKERVRELEEQRKKTRVESVSFVHQRSHIATVKGTTSGAMNSDECCRTNEALPTVEARVFKKDVLLRIHCKIQSGILIKILDHLNSLDLSTISNSVMPFGSSTLDISIIAQMGDNFNVTTMNDLVKNLRMTLSQSSEVQVQQ 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01980 375 SMART finulus 191 240 IPR011598 GO:0046983
Gma08g01980 375 Gene3D - 183 255 IPR036638 GO:0046983
Gma08g01980 375 PANTHER TRANSCRIPTION FACTOR NAI1 6 367 - -
Gma08g01980 375 MobiDBLite consensus disorder prediction 163 186 - -
Gma08g01980 375 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 185 234 IPR011598 GO:0046983
Gma08g01980 375 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 188 260 IPR036638 GO:0046983
Gma08g01980 375 MobiDBLite consensus disorder prediction 166 180 - -
Gma08g01980 375 PANTHER BHLH TRANSCRIPTION FACTOR 6 367 - -
Gma08g01980 375 Coils Coil 224 251 - -
Gma08g01980 375 Pfam Helix-loop-helix DNA-binding domain 190 234 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01980 Gma-Chr8 17808576 17810725 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01980 106 366 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.453 1.03e-40 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma08g01980 HLH 2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01980 - - gmx:100809956 718.383