Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01979 ATGGAGGAGCCATGGGAAAATTGGCATCTTCACATGGAAATGGATTGCGGGAACGATTTCTCAGGGAAGTGTCACGGCACTCACGATGACGAGTTCCTCAGAGACATCCTTCTTCAGCAACCACCTGCGGCTTTCTCGTCCGAAAGCGAAAGCGATCACTCCTTCCGCCCTGTCGTCCAAAACACTACCATCACCAACGACGGCGCCGTCAAAAGCAACAGCTCTCAAATCTCTTCCAAACGACCTCGTCCTTTGTCCACTCCCAGGACTTACATTCTGTCCTTCGACAACTCAACCATGCTTCCGGCCTCACCCGAACCCCGCCTCCGCTCTTCCAACAATAATTCCCCTTGGCCTCCGGAAAGCCCAGGCCCAGAACCTAGAAGGCCCATTACTGGAGGAGCTAAGAAGACCAGAACCTCTTCTCAGACCATCGATCACATAATGGCGGAGAGACGAAGGAGACAGGACCTCACTGAGAGGTTCATAGCACTCTCAGCCACCATTCCCGGCTTGAGCAAGACGGACAAGGCCTCTGTACTTCGAGCAGCAATCGATTATTTGAAACAACTTCAAGAAAGGGTACAGGAACTGGAGAAACAAGACAAAAAAAGGAGTAAGGAGTCAGTGATATTCAACAAGAAACCCGACCCAAATGGAAACAACAATGAAGACACCACCACCTCCACTGAAACGAACTGTAGCATCCTTCCTGAGATGGAAGTAAGAGTGTTGGGGAAGGAGGTGCTCATTGAGATCCACTGTGAGAAGGAGAATGGTGTTGAGCTAAAAATATTGGACCACCTTGAGAATCTTCATCTCAGTGTCACCGGTAGCAGTGTCTTGCCATTTGGAAATTCTTCTCTCTGCATTACCATCACAGCTCAGATGGGTGACGGGTACCAAATGACAATGAATGATCTAGTGAAAAACCTTAGACAAGTGCTCTCAAAATCACATTTGCTAAGCGACAGTGATCCGTACTAG 987 0.4894 MEEPWENWHLHMEMDCGNDFSGKCHGTHDDEFLRDILLQQPPAAFSSESESDHSFRPVVQNTTITNDGAVKSNSSQISSKRPRPLSTPRTYILSFDNSTMLPASPEPRLRSSNNNSPWPPESPGPEPRRPITGGAKKTRTSSQTIDHIMAERRRRQDLTERFIALSATIPGLSKTDKASVLRAAIDYLKQLQERVQELEKQDKKRSKESVIFNKKPDPNGNNNEDTTTSTETNCSILPEMEVRVLGKEVLIEIHCEKENGVELKILDHLENLHLSVTGSSVLPFGNSSLCITITAQMGDGYQMTMNDLVKNLRQVLSKSHLLSDSDPY 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01979 328 Coils Coil 181 208 - -
Gma08g01979 328 Gene3D - 140 211 IPR036638 GO:0046983
Gma08g01979 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 142 191 IPR011598 GO:0046983
Gma08g01979 328 MobiDBLite consensus disorder prediction 198 212 - -
Gma08g01979 328 MobiDBLite consensus disorder prediction 62 153 - -
Gma08g01979 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 204 IPR036638 GO:0046983
Gma08g01979 328 MobiDBLite consensus disorder prediction 62 117 - -
Gma08g01979 328 MobiDBLite consensus disorder prediction 198 231 - -
Gma08g01979 328 PANTHER BHLH TRANSCRIPTION FACTOR 1 321 - -
Gma08g01979 328 Pfam Helix-loop-helix DNA-binding domain 147 192 IPR011598 GO:0046983
Gma08g01979 328 SMART finulus 148 197 IPR011598 GO:0046983
Gma08g01979 328 MobiDBLite consensus disorder prediction 215 231 - -
Gma08g01979 328 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01979 Gma-Chr8 17788340 17791284 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01979 138 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 49.180 2.82e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma08g01979 HLH 2.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01979 - - gmx:100809422 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00251 07 2171187 2173894 Gma08g01979 08 17788340 17791284 GST