Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01978 ATGCTCTCGTTACTTCCTGATATGATGGAGGACTCATGGGAAAACTGGCTCTCTCATCTGGAAATGAATGATGATTTTGGCTGCACCAACGCTGTATCCTTTGATGAGATGGTAAGGTTCAACAATGATAGCTCAAATGTTGTGGCAGCTATTGGGCCAAAAGTGGAATACACTGACTCTTATTTGAAGAGCAGCGAAGAGGAATTTGGAACAAGTTGTTATTGGCCTAAAAGGGGTGTAGAGAACAACCATGAGTTGGAGGCAAAGACAATAAGGGATAACGACAGAGGAACAAAAAGGGCAAGAACCTCTACTGAGACACAGTATCATGTAATGTCAGAGAGAAAAAGGAGACAGGATATAGCGGAGAAATTCTTAGCACTCTCAGCTACTATACCTGGCTTGAAGAAGTTAGACAAGGCTACTGTGCTTCGGGAAGCCCTCAACTACATGCAACAACTTCAACAACGCATAGCAGTGCTGGAAAAAGCAGGGGGCAATAAGAATAAAAGTATAAAGTCATTGATCATCACGAAATCACGTCTTTGTTCTGCGTCATGTGAAACAAACTCTATTAGTGAAGTGCTCCCTGAAGTTGAAGCAAGAGGTTTAGGGAAGGAAGTACTCATTAGAATCTATTGTGAGAAACGAAAGGGCATCATACTCAAGCTATTGGCCCTACTAAAAGATCTTCATCTCTCAATAGCCAGTAGCAGCGTATTGCCATTTGGAAACTCTATCCTCAACATTATCATAATTGCTCAGATGAGTGAGAAATACAACATGACGGTGAACGATTTGGCTAAGAGCTTGAAGCAGATCTTTTGA 828 0.4167 MLSLLPDMMEDSWENWLSHLEMNDDFGCTNAVSFDEMVRFNNDSSNVVAAIGPKVEYTDSYLKSSEEEFGTSCYWPKRGVENNHELEAKTIRDNDRGTKRARTSTETQYHVMSERKRRQDIAEKFLALSATIPGLKKLDKATVLREALNYMQQLQQRIAVLEKAGGNKNKSIKSLIITKSRLCSASCETNSISEVLPEVEARGLGKEVLIRIYCEKRKGIILKLLALLKDLHLSIASSSVLPFGNSILNIIIIAQMSEKYNMTVNDLAKSLKQIF 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01978 275 Gene3D - 101 165 IPR036638 GO:0046983
Gma08g01978 275 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 105 154 IPR011598 GO:0046983
Gma08g01978 275 PANTHER BHLH TRANSCRIPTION FACTOR 14 275 - -
Gma08g01978 275 Coils Coil 144 164 - -
Gma08g01978 275 ProSiteProfiles ACT domain profile. 209 275 IPR002912 -
Gma08g01978 275 SMART finulus 111 160 IPR011598 GO:0046983
Gma08g01978 275 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 108 166 IPR036638 GO:0046983
Gma08g01978 275 Pfam Helix-loop-helix DNA-binding domain 110 155 IPR011598 GO:0046983
Gma08g01978 275 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 14 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01978 Gma-Chr8 17775761 17778335 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01978 6 272 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 35.714 8.34e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma08g01978 HLH 2.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01978 - - gmx:100808003 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00253 07 2195705 2198902 Gma08g01978 08 17775761 17778335 GST
Gma13g03302 13 46971480 46975791 Gma08g01978 08 17775761 17778335 PCT
Gma08g01978 08 17775761 17778335 Gma13g03304 13 46992662 46997680 PCT