Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01956 ATGGCGATTCTTTCGCTCCAATTCCATGCTCTTCCTTTTCCACTCCCAACTTCTTCTTCTTCTTCCTACTTTGACGCGATCCACCTTCGCTCTAACAACAAGAACCTCGTTTTCATCGCTTATCCTCTCTTTTCCATCAGCAGCAGCAGCAGCCGCCGGCGCTTTGCGACACTGGTTGCTTCAGCTTCCGGCGATTACTACGGCACTCTCGGAGTCTCCAAATCTGCCTCCGCCAGGGAAATCAAAGCTTCTTATCGACGACTAGCTCGCCAGTATCATCCTGATGTGAACAAGGAACCTGGAGCCACTGAGAAGTTCAAACAGATTAGCACTGCTTATGAGGTGCTATCAGATGATAAAAAGAGGGCAATGTATGATCAATATGGCGAGGCTGGAGTTAAGAGTACTGTAGGGGGAGCATCAGCTGCCTATACGACAAATCCATTAGACTTATTTGAGACATTTTTTGGGTCGAGAATGGGTGGGTTCTCTGGCATGGATCCAACTGAATTTGGAACATGGGAACAATGTACTACTGTTACTAAAGGTCAAGACATCCGAGAATTTGAGCTTTTTGACATGGAAATCTGCGAAGTTTGTAGTGGTACTGGAGCAAAGATAGGCTCCAAGATGAGAATATGTTCAACATGTGGTGGGAGGGGTCAGGTGATGAGGACTGAACAAACACCTTTTGGGTTGTTCTCACTGTTGATTTCAGTTTCAGTGTGTCCTAACTGTGGAGGGGATGATGAAGTCATATCTGAATATTGCACTAATTGCAGAGGTGAAGAACAAATACAGATTAAGAAAAACATTAAAGTTAAAGTTCCACCTGGGGTTAGCTCAGGCAGTATACTGCGAGTTGCTGGAGAGGGTGATGCTGGACCAAGATGGGGTCCTTCTGGAGATCTTTATGTTTATCTTGATGTGGAGGAGATATCCGGAATTCAAAGAGATGGCATTAATCTCCGCTCTACAATATCAATCAGTTATCTAGATGCCATACTAGGGGCAGTTGTCAAGGTGAAGACAGTTAAAGGCATTTCTGAACTTCAAATACCTCCTGCAAGGAAAGGTGCACCAAAATTAAACAAACCATCAATACGTGGTGACCACTTGTTTACTGTTAAAGTTACAATACCAAAACGTATCAGTACAATGGAACGTGAGTTGCTTGAAGAAGTTTCTTTGCTACGTAACTCAACAAGCAGCCATTCAAAATCTTATCTTAAAACCCAAAGAAGTACTGAAGGTCCTGCAACTCAAAATGTTGAAAGTACAGTAGCAACAGTGGCAGAACCTACTGCACAACCAGAAGATCAAAATGACGCGTGGAAGAAATTGAAGGACATTGCTGGATCTCTAGCAAATGGAGCTTTCAAGTCGCTGAAAGATAACCTTTAG 1404 0.4352 MAILSLQFHALPFPLPTSSSSSYFDAIHLRSNNKNLVFIAYPLFSISSSSSRRRFATLVASASGDYYGTLGVSKSASAREIKASYRRLARQYHPDVNKEPGATEKFKQISTAYEVLSDDKKRAMYDQYGEAGVKSTVGGASAAYTTNPLDLFETFFGSRMGGFSGMDPTEFGTWEQCTTVTKGQDIREFELFDMEICEVCSGTGAKIGSKMRICSTCGGRGQVMRTEQTPFGLFSLLISVSVCPNCGGDDEVISEYCTNCRGEEQIQIKKNIKVKVPPGVSSGSILRVAGEGDAGPRWGPSGDLYVYLDVEEISGIQRDGINLRSTISISYLDAILGAVVKVKTVKGISELQIPPARKGAPKLNKPSIRGDHLFTVKVTIPKRISTMERELLEEVSLLRNSTSSHSKSYLKTQRSTEGPATQNVESTVATVAEPTAQPEDQNDAWKKLKDIAGSLANGAFKSLKDNL 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01956 467 CDD DnaJ_zf 197 263 IPR001305 GO:0031072|GO:0051082
Gma08g01956 467 SUPERFAMILY HSP40/DnaJ peptide-binding domain 214 311 IPR008971 GO:0006457|GO:0051082
Gma08g01956 467 Pfam DnaJ domain 65 126 IPR001623 -
Gma08g01956 467 SUPERFAMILY HSP40/DnaJ peptide-binding domain 317 392 IPR008971 GO:0006457|GO:0051082
Gma08g01956 467 SUPERFAMILY Chaperone J-domain 62 166 IPR036869 -
Gma08g01956 467 Gene3D DnaJ domain 62 167 IPR036869 -
Gma08g01956 467 Gene3D - 235 310 - -
Gma08g01956 467 Gene3D - 316 397 - -
Gma08g01956 467 ProSiteProfiles dnaJ domain profile. 65 129 IPR001623 -
Gma08g01956 467 Pfam DnaJ central domain 197 263 IPR001305 GO:0031072|GO:0051082
Gma08g01956 467 Pfam DnaJ C terminal domain 264 381 IPR002939 -
Gma08g01956 467 SMART dnaj_3 64 121 IPR001623 -
Gma08g01956 467 ProSiteProfiles Zinc finger CR-type profile. 184 269 IPR001305 GO:0031072|GO:0051082
Gma08g01956 467 PANTHER MOLECULAR CHAPERONE HSP40/DNAJ FAMILY PROTEIN 52 409 - -
Gma08g01956 467 PRINTS DnaJ domain signature 121 140 IPR001623 -
Gma08g01956 467 PRINTS DnaJ domain signature 101 121 IPR001623 -
Gma08g01956 467 PRINTS DnaJ domain signature 85 100 IPR001623 -
Gma08g01956 467 PRINTS DnaJ domain signature 67 85 IPR001623 -
Gma08g01956 467 Hamap Chaperone protein DnaJ [dnaJ]. 62 451 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Gma08g01956 467 ProSitePatterns Nt-dnaJ domain signature. 106 125 IPR018253 -
Gma08g01956 467 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 188 266 IPR036410 -
Gma08g01956 467 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 52 409 - -
Gma08g01956 467 CDD DnaJ 65 118 IPR001623 -
Gma08g01956 467 CDD DnaJ_C 261 384 - -
Gma08g01956 467 Gene3D - 193 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01956 Gma-Chr8 17533358 17538942 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01956 66 128 C2H2 Transcription Factor Family AT1G74250 50.725 4.95e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01956 K03686 - gmx:100798567 589.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01956 08 17533358 17538942 Gma08g01956 08 17533358 17538942 ECH