Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01954 ATGGCTTTTTGGTTTTGTTGCGGAAAAGTTTCCACTCGCAGAAGGCGAGGGAAAGAACTACCAACATGGCGGGTGTTTTCTTTGAAGGAATTACACTCtgccacaaataatttcaactatgataacaagcttggagaagggagcttcggCAGTGCGTACTGGGGCCAACTTTGGGATGGATCGCAAATTGCAGTGAAAAGATTGAAAGTTTGGAGCAACATAGCAGAGACGGAATTTACCGTTGAACTTGAAATATTGGCAAGAATACGACACAAGAATCTTCTCAGTCTCCGTGGCTACTGTGCTGAAGGACAGGAACGGTTAATTGTATACGAATATATGCAAAATTTGAGCCTCCACTCTCATCTTCATGGACATCACTCATTCGAATGCCTTCTTGATTGGAATCGGCGTATGAATATTGCAATTGGTTCTGCTGAAGGAATTGTGtatcttcatcaccaagcaacaccgcatatcatccacagggatattaaagcaagcaacgtgttgctggatTCTGATTTCCGTGCTCGTGTTGCTGATTTCGGGTTTGCTAAGTTGATCCCTGACGGGGCAACGCATGTGACTACAAAAGTTAAGGGTACCCTGGGCTACCTTGCACCAGAATATGCCATGTTAGGAAAAGCAAATGAGAGTTGTGATGTCTACAGTTTTGGCATTCTCCTTCTAGAACTTGCCAGTGGCAAGAGACCAATTGAAAAGCTTAATTCGACGGTGAGGCGATCGATAGTTGATTGGGCATTGCCTTTGGTTTGTGAGAAGAAATTTAGTGAAATTGCTGATCCAAGACTGAATGGGAACTATGTGGAGGGAGAGCTTAAAAGAGTTGTTTTAGTTGCACTTATGTGTGCTCAGGATCTACCTGAGAAGAGACCGACCATGCTTGACGTGGTAGAGCTACTGAAGGGAGAATCTAAAGATAAATTTTATCACATAGAGAACAGTGAAATGCTCAGAAGCCTTCTAGCTGTAGAAAGCAATGATGAGACATCAGTGGCTGAAGAAGACAGTTTAGACTATATATCAGAAGAAAAAGAATTAGAACGTCCCTTGAAAGAGTATACTTAA 1092 0.3782 MAFWFCCGKVSTRRRRGKELPTWRVFSLKELHSATNNFNYDNKLGEGSFGSAYWGQLWDGSQIAVKRLKVWSNIAETEFTVELEILARIRHKNLLSLRGYCAEGQERLIVYEYMQNLSLHSHLHGHHSFECLLDWNRRMNIAIGSAEGIVYLHHQATPHIIHRDIKASNVLLDSDFRARVADFGFAKLIPDGATHVTTKVKGTLGYLAPEYAMLGKANESCDVYSFGILLLELASGKRPIEKLNSTVRRSIVDWALPLVCEKKFSEIADPRLNGNYVEGELKRVVLVALMCAQDLPEKRPTMLDVVELLKGESKDKFYHIENSEMLRSLLAVESNDETSVAEEDSLDYISEEKELERPLKEYT 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01954 363 Pfam Protein kinase domain 39 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g01954 363 Gene3D Phosphorylase Kinase; domain 1 9 113 - -
Gma08g01954 363 PANTHER BNAA05G14800D PROTEIN 4 357 - -
Gma08g01954 363 SUPERFAMILY Protein kinase-like (PK-like) 20 309 IPR011009 -
Gma08g01954 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Gma08g01954 363 ProSitePatterns Protein kinases ATP-binding region signature. 44 66 IPR017441 GO:0005524
Gma08g01954 363 SMART serkin_6 38 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g01954 363 Gene3D Transferase(Phosphotransferase) domain 1 114 327 - -
Gma08g01954 363 ProSiteProfiles Protein kinase domain profile. 38 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g01954 363 PANTHER OS01G0750732 PROTEIN 4 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01954 Gma-Chr8 17509024 17512376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01954 25 305 Trihelix Transcription Factor Family AT1G68690 48.070 2.50e-89 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Gma08g01954 Pkinase 2.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01954 - - gmx:100791193 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01954 08 17509024 17512376 Gma08g01954 08 17509024 17512376 ECH
Gma07g00276 07 2405946 2415824 Gma08g01954 08 17509024 17512376 GST
Gma13g03279 13 46756237 46759243 Gma08g01954 08 17509024 17512376 PCT
Gma15g00072 15 606823 609230 Gma08g01954 08 17509024 17512376 PCT
Gma08g01954 08 17509024 17512376 Gma13g03279 13 46756237 46759243 PCT
Gma08g01954 08 17509024 17512376 Gma15g00072 15 606823 609230 PCT