Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01939 ATGGCGCAAATTCTGCTTCATGGGACTCTCCACGCCACCGTCTTCGAGGTTGATAGGCTCAATGCTGGTGGTGGTGGCGGCAATTTTTTCAGCAAGCTCAAGCAAAACTTTGAGGAGACTGTTGGCATCGGAAAGGGAGTTACTAAACTCTATGCAACCATTGATCTGGAGAAAGCAAGAGTAGGAAGGACTAGAATCATAGAAAATGAACATACTAATCCCAGATGGTATGAGTCTTTTCACATTTATTGTGCTCATATGGCTTCAAATATCATATTCACTGTGAAAGATGATAATCCTATTGGGGCAACTTTAATTGGAAGAGCTTATGTGCCTGTTTCGGAGGTCTTGGATGGTGAGGAAATAGATAGGTGGGTTGAAATCTTGGACGAGGAAAAAAACCCAATACAAGAGGGTTCAAAGATCCATGTGAAGCTGCAATATTTTGATGTCACAAAAGACCGCAACTGGGCTCGAGGCATTAGAAGTCCCAAATTCCCCGGCGTTCCCTATACTTTCTTCTCACAGAGGCAAGGATGTAAGGTATCTCTGTACCAAGATGCTCATGTACCTGATAATTTTGTACCTAAAATACCTCTTGCTGGAGGCAAGAATTATGAGGCTCATAGGTGTTGGGAGGATATATTTGATGCAATCACTAATGCTAGACACTTCATATACATTACTGGTTGGTCTGTTTATACTGAAATTTCCTTGGTGAGGGATTCTAGGAGGCCAAAGCCTGGGGGAGACCAAACACTTGGTGAGCTTCTCAAGAAAAAGGCAAATGAAGGGGTTAAGGTATTGATGCTTGTTTGGGATGATAGAACATCAGTTGGTTTGTTGAAAAAAGATGGACTAATGGCTACTCACGATGAAGAAACTGCACAGTTCTTTGAAGGCACTGAGGTGCATTGTGTTTTATGCCCCCGCAATCCTGATGATGGTGGTAGCATTGTTCAGGATTTACAAATTTCTACCATGTTTACTCATCACCAGAAGATCGTGGTGGTTGACGGTGCGATGCCAGGTGAAGGGTCAGATAGGCGAAGAATTGTGAGTTTTGTTGGGGGTATTGACCTCTGCGACGGAAGATATGACACTGCCTTCCACTCACTTTTCAGAACCCTAGACACAGCACACCATGACGATTTTCATCAGCCTAACTTTCCTGGTGCTGCTATCACAAAAGGTGGTCCCAGGGAACCATGGCACGACATCCACTCCCGGCTTGAAGGACCCATAGCTTGGGATGTTTTGTTCAACTTTGAGCAGAGATGGAGAAAGCAAGGTGGGAAGGATGTACTTGTTCCACTGAGAGAGCTTGAAGATGTCATTATTCCCCCATCCCCAGTAACGTTTCCTGAAGATCATGAGACCTGGAATGTTCAGTTGTTTAGATCCATTGATGGTGGGGCTGCTTTTGGGTTCCCGGAGACTCCTGAAGATGCTGCCAGAGCTGGTCTTATTAGTGGGAAGGATAATATCATTGATCGTAGCATTCAAGATGCTTATATTAATGCTATTCGACGTGCAAAGAACTTCATCTATATTGAAAATCAGTATTTCCTTGGAAGCTCTTTTGCCTGGAGTGCTGATGATATTAAGCCTGAAGACATTGGTGCTTTGCATCTAATCCCAAAGGAACTTTCACTCAAGATTGTTAGTAAGATTGAAGCTGGGGAAAGGTTTGCTGTGTATGTTGTAGTCCCAATGTGGCCAGAGGGTGTTCCAGAAAGTGCATCAGTTCAGGCAATATTGGACTGGCAGAAGAGAACAATGGAGATGATGTACAAGGACATTATTCAGGCACTCAGAGCTAAGGGAATCGATGAAGATCCTCGAAACTATTTGACATTCTTCTGCCTTGGCAACCGGGAAGTGAAGAAACCAGGAGAATATGAGCCTTCTGAGCAACCAGATCCTGATTCAGATTATCAGAGAGCCCAAGAGGCCCGACGATTCATGATTTATGTTCATACCAAGATGATGATAGttgaTGACGAATACATAATCGTTGGATCTGCCAATATCAACCAAAGGTCAATGGATGGTGCTAGGGACTCTGAGATTGCCATGGGTGCTTATCAGCCCTATCATTTGGCTACCAGGCAGCCAGCACGTGGTCAGATTCACGGTTTCCGCATGTCATTGTGGTATGAGCACCTTGGCATGCTTCATGACTCCTTCCTCCAGCCAGAAAGTGATGAATGCATTAACAAGGTGAACCAAGTTGCTGACAAATATTGGGATCTGTATTCTAACGAGTCACTTGAGCATGACCTTCCCGGTCACCTTCTCCGCTACCCCATCGGGGTTGCCAGTGAAGGAGATGTCACCGAGCTGCCAGGATTTGAATTCTTTCCCGACACCAAGGCTCGCATTCTTGGTGGCAAAGCTGACTACCTCCCCCCTATTCTCACTACTTAA 2430 0.4477 MAQILLHGTLHATVFEVDRLNAGGGGGNFFSKLKQNFEETVGIGKGVTKLYATIDLEKARVGRTRIIENEHTNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVSEVLDGEEIDRWVEILDEEKNPIQEGSKIHVKLQYFDVTKDRNWARGIRSPKFPGVPYTFFSQRQGCKVSLYQDAHVPDNFVPKIPLAGGKNYEAHRCWEDIFDAITNARHFIYITGWSVYTEISLVRDSRRPKPGGDQTLGELLKKKANEGVKVLMLVWDDRTSVGLLKKDGLMATHDEETAQFFEGTEVHCVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDGAMPGEGSDRRRIVSFVGGIDLCDGRYDTAFHSLFRTLDTAHHDDFHQPNFPGAAITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDVLVPLRELEDVIIPPSPVTFPEDHETWNVQLFRSIDGGAAFGFPETPEDAARAGLISGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFAWSADDIKPEDIGALHLIPKELSLKIVSKIEAGERFAVYVVVPMWPEGVPESASVQAILDWQKRTMEMMYKDIIQALRAKGIDEDPRNYLTFFCLGNREVKKPGEYEPSEQPDPDSDYQRAQEARRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGAYQPYHLATRQPARGQIHGFRMSLWYEHLGMLHDSFLQPESDECINKVNQVADKYWDLYSNESLEHDLPGHLLRYPIGVASEGDVTELPGFEFFPDTKARILGGKADYLPPILTT 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01939 809 SUPERFAMILY Phospholipase D/nuclease 152 445 - -
Gma08g01939 809 ProSiteProfiles C2 domain profile. 1 126 IPR000008 -
Gma08g01939 809 SUPERFAMILY Phospholipase D/nuclease 456 739 - -
Gma08g01939 809 Gene3D C2 domain 7 159 IPR035892 -
Gma08g01939 809 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 655 682 IPR001736 GO:0003824
Gma08g01939 809 SMART C2_3c 9 125 IPR000008 -
Gma08g01939 809 CDD C2_plant_PLD 2 149 - -
Gma08g01939 809 Pfam C2 domain 10 128 IPR000008 -
Gma08g01939 809 PANTHER PHOSPHOLIPASE D 2 809 IPR015679 -
Gma08g01939 809 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 327 365 IPR001736 GO:0003824
Gma08g01939 809 PANTHER PHOSPHOLIPASE D ALPHA 1 2 809 - -
Gma08g01939 809 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 7 151 IPR035892 -
Gma08g01939 809 SMART pld_4 655 682 IPR001736 GO:0003824
Gma08g01939 809 SMART pld_4 327 365 IPR001736 GO:0003824
Gma08g01939 809 Pfam Phospholipase D Active site motif 327 365 IPR001736 GO:0003824
Gma08g01939 809 Pfam Phospholipase D Active site motif 656 682 IPR001736 GO:0003824
Gma08g01939 809 PIRSF PLD_plant 1 809 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Gma08g01939 809 Pfam Phospholipase D C terminal 728 798 IPR024632 -
Gma08g01939 809 Gene3D Endonuclease Chain A 200 441 - -
Gma08g01939 809 Gene3D Endonuclease Chain A 484 701 - -
Gma08g01939 809 CDD PLDc_pPLDalpha_2 493 702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01939 Gma-Chr8 17402090 17406396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01939 1 809 Phospholipase D Gene Family (Wang group) AT3G15730 82.840 0.0 1432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01939 K01115 - gmx:100786410 1673.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00290 07 2506118 2510385 Gma08g01939 08 17402090 17406396 ECH
Gma08g01939 08 17402090 17406396 Gma08g01939 08 17402090 17406396 ECH
Gma07g00290 07 2506118 2510385 Gma08g01939 08 17402090 17406396 GST