Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01887 ATGGATTTCTGGCCAGAATTTCTTGCAAGCGGTTCGGGAAGAGAGTTTGTAGCAGGTGGCTTTGGAGGCATTGCTGGTATAATTTCAGGTTATCCACTTGATACTCTTCGAATCAGATTACAAAACTCGAAAAATGGCTCTGCATTCACAATCCTTAGACAAATGGTGTCTAGGGAAGGACCAACTTCTTTGTACCGTGGCATGGGCGCACCATTAGCCTCCGTTACTTTTCAGAATGCAATGGTTTTCCAAACGTACGCAGTTCTGTCAAGGGTATTTGACTCATCTGTTTTTGCTAAAGACCCTCCTTCCTACAAGGGTGTTGCTTTAGGAGGAACGGGTGCCGGGGTTCTCCAAAGTCTATTAATATCCCCTGTGGAGTTGACCAAAGTTCAACTTCAGCTGCAAAACGGAGGCAAGATGACAGAATCTGTAAAAGGTTCTTTGACACTCGCCAAAAATATATGGAGAAAAGAAGGCCTCAGAGGAATCTATCGCGGACTTGGTCTCACAGTGATGAGGGATGGACCTTCTCATGGTTTATACTTCTGGACATACGAATACATGAGGGAACAGCTTCACCCAGGTTGCAGAAAAAGTGGTGAAGAGAGTTTGGATACCATGTTGATAGCAGGAGGATTAGCAGGGGTGACGAGTTGGATTAGTTGCTACCCTTTTGATGTTGTAAAGACAAGACTACAGGCTCAAACACCCTCTTCTATAAAGTACAAAGGCATTATAGATTGTTTCAAAAAGAGTGTTAACGCAGAAGGATACGGTGTGCTATGGCGGGGTTTAGGAACTACAGTTGCCAGAGCGTTCCTCGTAAATGCTGCCGTATTTTCTGCTTATGAGATTTCACTAAGATTATTGTTTAACAATGGGAGTATTCAAATGCAGGAAACACTATAG 912 0.4353 MDFWPEFLASGSGREFVAGGFGGIAGIISGYPLDTLRIRLQNSKNGSAFTILRQMVSREGPTSLYRGMGAPLASVTFQNAMVFQTYAVLSRVFDSSVFAKDPPSYKGVALGGTGAGVLQSLLISPVELTKVQLQLQNGGKMTESVKGSLTLAKNIWRKEGLRGIYRGLGLTVMRDGPSHGLYFWTYEYMREQLHPGCRKSGEESLDTMLIAGGLAGVTSWISCYPFDVVKTRLQAQTPSSIKYKGIIDCFKKSVNAEGYGVLWRGLGTTVARAFLVNAAVFSAYEISLRLLFNNGSIQMQETL 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01887 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 192 IPR018108 -
Gma08g01887 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 92 IPR018108 -
Gma08g01887 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 203 290 IPR018108 -
Gma08g01887 303 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 1 293 - -
Gma08g01887 303 SUPERFAMILY Mitochondrial carrier 14 285 IPR023395 -
Gma08g01887 303 Gene3D Mitochondrial carrier domain 9 300 IPR023395 -
Gma08g01887 303 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Gma08g01887 303 PRINTS Mitochondrial carrier protein signature 28 42 IPR002067 GO:0055085
Gma08g01887 303 PRINTS Mitochondrial carrier protein signature 165 183 IPR002067 GO:0055085
Gma08g01887 303 PRINTS Mitochondrial carrier protein signature 212 234 IPR002067 GO:0055085
Gma08g01887 303 Pfam Mitochondrial carrier protein 13 93 IPR018108 -
Gma08g01887 303 Pfam Mitochondrial carrier protein 208 294 IPR018108 -
Gma08g01887 303 Pfam Mitochondrial carrier protein 109 193 IPR018108 -
Gma08g01887 303 PANTHER CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN 1 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01887 Gma-Chr8 16954851 16958424 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01887 1 294 Antiporters AT1G79900 68.814 1.72e-140 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01887 K15109 - gmx:100791536 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01887 08 16954851 16958424 Gma08g01887 08 16954851 16958424 ECH
Gma07g00049 07 408601 411420 Gma08g01887 08 16954851 16958424 GST