Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01866 ATGACTCTCCCTTCACACGATGCTTGGATTCACACTTCACACACACTCCTCCCCAGATGGAAATCTCTTTCCCTCCCTCATCAGCAGTCAACTCTTCCAATTTCTATATCAAGAGTTAACCAAGTTGATGCAGCGAGATTGGACGTTGAAATGTCAGCCATGTTGAAAGAACAGTTGGTTAAAGTGTTCTCATTAATGAAGCCAGGAATGTTATTTCAGTATGAAGCCGAGCTTGATGCTTTCCTTGAGTTTCTTATTTGGAGGTTCTCAATTTGGGTGGATAAGCCAACCCCAGGCATTGCTCTCATGAACCTGAGGTACAGAGACGAGCGTGCAGTAGAACCAAGAGATAAAGTCCGAACTGGTCTGGAGGGACCTGGACTCACTGTTGCTCAGAAGCTTTGGTATTGTATTGCCACTGTTGGTGGTCAGTATATATGGGCTCGCTTACAATCCTTCTCTGCTTTTCGTAGATGGGGTGATACTGAGCAGAGACCATTGGCTAGACGTTTATGGATCTTGATACAACGGATAGAAGGAATATATAGAGCTGCTTCATTTGGAAACCTGTTGATATTTCTTTGCACTGGAAGATATCGAAATCTTATTGAAAGAGCCTTACGAGCTAGGCTTGTATATGGAAGCCCGAATATGAATCGTGCTGTTAGCTTTGAATATATGAACCGGCAATTAGTTTGGAATGAATTTTCGGAAATGTTATTGTTGCTTCTCCCCCTTCTTAATTCATCATCCGTGAAAAATCTCCTTCGACCTTTTTCTAAAGATAAATCATTAAGTTCAGCTGAGGATGGCTCAGCATGTCCCATTTGTCAGGCTACTCCCACAATTCCTTATGTTGCTCTACCTTGCCAGCACAGATATTGTTACTACTGTCTTAGGACACGATGTGCTGCTGCTCCATCGTTTAGGTGTTCCAGGTGCAGTGAGCCCGTTGTTGCTATGCAACGACATGGTGGTGTCCCTTCAGAATGA 993 0.435 MTLPSHDAWIHTSHTLLPRWKSLSLPHQQSTLPISISRVNQVDAARLDVEMSAMLKEQLVKVFSLMKPGMLFQYEAELDAFLEFLIWRFSIWVDKPTPGIALMNLRYRDERAVEPRDKVRTGLEGPGLTVAQKLWYCIATVGGQYIWARLQSFSAFRRWGDTEQRPLARRLWILIQRIEGIYRAASFGNLLIFLCTGRYRNLIERALRARLVYGSPNMNRAVSFEYMNRQLVWNEFSEMLLLLLPLLNSSSVKNLLRPFSKDKSLSSAEDGSACPICQATPTIPYVALPCQHRYCYYCLRTRCAAAPSFRCSRCSEPVVAMQRHGGVPSE 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01866 330 Pfam Pex2 / Pex12 amino terminal region 48 252 IPR006845 -
Gma08g01866 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 325 IPR013083 -
Gma08g01866 330 SUPERFAMILY RING/U-box 269 320 - -
Gma08g01866 330 SMART ring_2 274 314 IPR001841 -
Gma08g01866 330 ProSitePatterns Zinc finger RING-type signature. 290 299 IPR017907 -
Gma08g01866 330 Pfam Zinc finger, C3HC4 type (RING finger) 274 314 IPR018957 GO:0046872
Gma08g01866 330 CDD RING-HC_PEX2 273 315 - -
Gma08g01866 330 ProSiteProfiles Zinc finger RING-type profile. 274 315 IPR001841 -
Gma08g01866 330 PANTHER - 3 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01866 Gma-Chr8 16786059 16790296 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01866 K06664 - gmx:100805856 661.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01866 08 16786059 16790296 Gma08g01866 08 16786059 16790296 ECH
Gma07g00177 07 1485455 1498065 Gma08g01866 08 16786059 16790296 GST