Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01863 ATGACTACACCCTTGGAACATGATTACATAGGCTTATCAGAGGCTCCATCCATGGAGAAAAGCTGTGATAAGATATCCTCTTCAGTTTCCTCCAATCTTTCTTCTGAGGATGAGAACACTACTTCATCTCTGAACTTCAAGGAGACAGAGCTGAGGCTTGGCCTGCCAGGTTGTGATTCTCCTGAGAACAACAACAAATCAGGGGTCTCTCTTTTTGGCAAGGATTTGCAGAAGAAGAATAATGGCTATTCTTCTGCTTCTTCAACTCCTTCCAACAAGAACCTCAAGAGGGGCTTCCCTGATGCCATTAGCTCTTCTTCTTCCTCTTCTGGGAAATGGATTTTCTCGGCGAGTGATGCAGCAACTGAAGCTGATTTGGAAAGTGGTTCTAATATCTCTGGAGGATGCAACAAAGAGGTTGGAATGGTTCCTCACTATGAGAAACCAGCTCAAGTTGCTGCAACAAATGAACATGCTCCTGCTCCTGCTCCAAAAGCACAAGTTGTGGGATGGCCACCAATTCGATCTTTTCGAAAGAACACGATGATGGCTTATAATTTGGCAAAATGTGACAACGAAGCTGAGGAGAAATCAGGAGTAGGTTGTCTTTACGTTAAGGTCAGCATGGATGGTGCTCCATATCTCAGAAAGGTTGATCTGAAAACCTACAGCAACTATATTGAACTTTCTTCAGCTCTTGAGAAAATGTTCAGCTGCTTTACCATTGGTCAATGCAATTCTCGTGCACTTCCTGGGAAAGATGGATTAAGTGAGAGTGCATTCAGGGATCTTGTTGATGGCTCTGAATATGTTCTTACATATGAAGATAAGGAAGGAGACTGGATGCTTGTGGGTGATGTCCCTTGGAAAATGTTCACTGAGTCATGTAAGAAACTAAGGATAATGAAAGGCTCTGAGGCAATCGGGCTAGCTCCAAGGGGTATGGAAAAATTTAGGAGCCAATACTAG 969 0.4345 MTTPLEHDYIGLSEAPSMEKSCDKISSSVSSNLSSEDENTTSSLNFKETELRLGLPGCDSPENNNKSGVSLFGKDLQKKNNGYSSASSTPSNKNLKRGFPDAISSSSSSSGKWIFSASDAATEADLESGSNISGGCNKEVGMVPHYEKPAQVAATNEHAPAPAPKAQVVGWPPIRSFRKNTMMAYNLAKCDNEAEEKSGVGCLYVKVSMDGAPYLRKVDLKTYSNYIELSSALEKMFSCFTIGQCNSRALPGKDGLSESAFRDLVDGSEYVLTYEDKEGDWMLVGDVPWKMFTESCKKLRIMKGSEAIGLAPRGMEKFRSQY 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01863 322 Gene3D - 196 315 - -
Gma08g01863 322 MobiDBLite consensus disorder prediction 77 111 - -
Gma08g01863 322 SUPERFAMILY CAD & PB1 domains 202 303 - -
Gma08g01863 322 MobiDBLite consensus disorder prediction 1 111 - -
Gma08g01863 322 PANTHER AUXIN-RESPONSIVE PROTEIN 4 313 - -
Gma08g01863 322 MobiDBLite consensus disorder prediction 20 48 - -
Gma08g01863 322 Pfam AUX/IAA family 48 313 IPR033389 -
Gma08g01863 322 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 313 IPR003311 GO:0005634|GO:0006355
Gma08g01863 322 ProSiteProfiles PB1 domain profile. 202 304 IPR000270 GO:0005515
Gma08g01863 322 Coils Coil 315 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01863 Gma-Chr8 16767505 16770532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01863 204 320 B3 DNA Binding Superfamily AT1G30330 30.769 7.90e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gma08g01863 AUX_IAA 6.7e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01863 K14484 - gmx:100804782 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01863 08 16767505 16770532 Gma08g01863 08 16767505 16770532 ECH
Gma07g00174 07 1466167 1468886 Gma08g01863 08 16767505 16770532 GST