Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01855 ATGACACAACAAGCAACAACCTCTTCCGAAACAACAACTTCCTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCACATTTTCACCCTCGCAGCATTCGGGCCCAAAGGCCCAGGCCCAGAAACAGAGCAAGAGGCCCAGGGACTGCAGCAAGCACCCGGTGTACCACGGCGTGCGGAAGCGCAACTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCACGCAAGAAGTCCCGAATCTGGCTCGGAACATTCGCCACTCCTGAAATGGCGGCGCGAGCCCACGACGTGGCGGCTCTCACCATCAAGGGCGAGTCAGCAATCCTCAATTTCCCCGAAATTGCGGACCTGCTCCCCAGGCCCGTCACGTGCGCTCCACGTGACATCCAGGCTGCGGCCACGGCCGCGGCCTCCATGGTTAAATTCGACCCCGTGACGCAATCCTCGGACTCGGAGACTCCGGAGTCTTCGGAGCTGAGCGAGATTGTTGAACTTCCCAACATTGAAGACAGCAGCTTTGACTCCGTTGACTCCAGACCGGAGTTCGTGTTGGTCGATGTTGTTGACGGTTGGGTGTTTCCGCCAATGGGAATGGGGTCAGAGGGAATCGAGATCTGTGCCGCTTTTTCTGATGAGTTGTTTCCGCAACAGAGTTTTGTTGATGAGATAGAGATACTACCCATTTGGGATTGA 687 0.5633 MTQQATTSSETTTSSSSSSSSSSSTFSPSQHSGPKAQAQKQSKRPRDCSKHPVYHGVRKRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALTIKGESAILNFPEIADLLPRPVTCAPRDIQAAATAAASMVKFDPVTQSSDSETPESSELSEIVELPNIEDSSFDSVDSRPEFVLVDVVDGWVFPPMGMGSEGIEICAAFSDELFPQQSFVDEIEILPIWD 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01855 228 CDD AP2 54 111 IPR001471 GO:0003700|GO:0006355
Gma08g01855 228 Gene3D AP2/ERF domain 53 112 IPR036955 GO:0003700|GO:0006355
Gma08g01855 228 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Gma08g01855 228 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 210 - -
Gma08g01855 228 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Gma08g01855 228 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Gma08g01855 228 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Gma08g01855 228 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 17 210 - -
Gma08g01855 228 MobiDBLite consensus disorder prediction 40 54 - -
Gma08g01855 228 MobiDBLite consensus disorder prediction 1 39 - -
Gma08g01855 228 MobiDBLite consensus disorder prediction 1 55 - -
Gma08g01855 228 Pfam AP2 domain 52 102 IPR001471 GO:0003700|GO:0006355
Gma08g01855 228 SUPERFAMILY DNA-binding domain 53 110 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01855 Gma-Chr8 16719407 16720557 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01855 37 193 AP2-EREBP Transcription Factor Family AT5G11590 56.497 4.47e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gma08g01855 AP2 3.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01855 K09286 - gmx:100801780 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01855 08 16719407 16720557 Gma08g01855 08 16719407 16720557 ECH
Gma07g00165 07 1420195 1421338 Gma08g01855 08 16719407 16720557 GST