Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01853 ATGGAGGCGCCGGAATACTTCGTCGGAGGCTATTTTGGCGCCGGAGGAGCCGAACAGTTCTCTCTGTCGGAAAAGCGCCACTCCGACCAGAAAACTGGCGAGCCTTTCGCCATTGACGACCTCCTCGACTTCTCCCATGCGGATGCCATTATGTCCGACGGTTTCTTCGACAATGTCACCGGAAACTCCACTGACTCCTCCACTGTCACCGCCGTCGACAGCTGCAACTCCTCAATTTCCGGCAGCGACAACCACTTCGCCACCGCCATTGTCCCCCGCTGCTACCACAGCGATCCTCAATTCTCCGGAGAACTCTGCGTTCCGTATGATGAAATGGCGGAACTGGAATGGCTCTCGAACTTCGTGGAAGACTCGTTCTCCGCCGAGGAGGAGCTGAAGACGCTGCAGCTGCTCTCGGGCGGCGGCGCCGCGTCCACCGCCATTGGCGCGAAACCGCAGACGCCGGAGTCCTCCTCCTCCACCGACACGCTTCCGCCGTTCGCCTCCGACGGCACCTTGCGAAACGCACCGTTTCTCCACTCGGAAACTCCTCGCCCAGGGAAGGCACGCAGCAAGCGCTCACGCGCGGCGCCGGGGGACTGGTCCACGCGCCTGCTCCACCTGGTCGCGCCGGAGAAGGAGAAGCCGCCGCAGGCGAAGAAGAGAGAGGGAACGAATGTGGAGTGTTCCGGACGCAAATGCCTTCACTGCGGCGCGGAGAAGACGCCGCAGTGGCGAACGGGACCGATGGGACCGAAAACTCTATGCAACGCGTGCGGCGTGAGGTTCAAGTCCGGGAGGCTGGTGCCGGAATACCGGCCGGCGGCGAGTCCAACGTTCATGTCAACGAAGCATTCGAATTCGCATCGGAAGGTTTTGGAGCTCAGGCGGCAGAAGGAGATGCAACGACAGCAGCATCATCAGCAGTTGATGAGTCAAAGTTCAATTTTCGGCGTATCCAACGGTGGAGATGAATTCTCGATCCATCATCATCATCATAATCATCACCTCCATTGTGGGCCAGACTTTAGACACGTTATTTAG 1044 0.5939 MEAPEYFVGGYFGAGGAEQFSLSEKRHSDQKTGEPFAIDDLLDFSHADAIMSDGFFDNVTGNSTDSSTVTAVDSCNSSISGSDNHFATAIVPRCYHSDPQFSGELCVPYDEMAELEWLSNFVEDSFSAEEELKTLQLLSGGGAASTAIGAKPQTPESSSSTDTLPPFASDGTLRNAPFLHSETPRPGKARSKRSRAAPGDWSTRLLHLVAPEKEKPPQAKKREGTNVECSGRKCLHCGAEKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFMSTKHSNSHRKVLELRRQKEMQRQQHHQQLMSQSSIFGVSNGGDEFSIHHHHHNHHLHCGPDFRHVI 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01853 347 PIRSF Txn_fac_GATA_plant 18 322 IPR016679 GO:0003677|GO:0005634|GO:0045893
Gma08g01853 347 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 231 292 - -
Gma08g01853 347 PANTHER GATA TRANSCRIPTION FACTOR 9 1 347 - -
Gma08g01853 347 MobiDBLite consensus disorder prediction 144 201 - -
Gma08g01853 347 CDD ZnF_GATA 233 280 IPR000679 GO:0006355|GO:0043565
Gma08g01853 347 PANTHER GATA TRANSCRIPTION FACTOR 1 347 - -
Gma08g01853 347 Gene3D - 229 314 IPR013088 GO:0006355|GO:0008270
Gma08g01853 347 ProSiteProfiles GATA-type zinc finger domain profile. 228 264 IPR000679 GO:0006355|GO:0043565
Gma08g01853 347 Pfam GATA zinc finger 234 267 IPR000679 GO:0006355|GO:0043565
Gma08g01853 347 ProSitePatterns GATA-type zinc finger domain. 234 259 IPR000679 GO:0006355|GO:0043565
Gma08g01853 347 MobiDBLite consensus disorder prediction 150 168 - -
Gma08g01853 347 SMART GATA_3 228 278 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01853 Gma-Chr8 16685261 16686865 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01853 34 347 C2C2-Gata Transcription Factor Family AT4G32890 44.308 4.71e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma08g01853 GATA 4.6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01853 - - gmx:100801234 650.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01853 08 16685261 16686865 Gma08g01853 08 16685261 16686865 ECH
Gma07g00326 07 2810283 2816375 Gma08g01853 08 16685261 16686865 GST