Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01852 ATGTCCTGCAAGGATGGTAGCAGAAACGGAATCGGAATCGGAATGGATAACGGGAAGTACGTGCGTTACACGCCTGAGCAGGTTGAAGCCCTAGAGAGGCTCTATCACGATTGCCCCAAACCTAGTTCCATTCGCCGCCTGCAACTCATTCGCGAGTGCCCCACTCTCTCCCACATTGATCCCAAGCAAATCAAGGTTTGGTTCCAGAACAGAAGATGTAGAGAGAAGCAGAGGAAGGAGTCGTCGCGGCTGCAAGCTGTAAATAGGAAGTTGACTGCCATGAACAAGCTGCTCATGGAGGAGATTGATAGGTTGCAGAAGCAGGTCTCTCAACTCGTCTATGAAAATGGCTATTTTCGTCAACATACCACCCAAAATACTAAGCAGCAGGCAATCAAAGACACAAGCTGTGAATCAGCTGTGAGGAGTGGTCAGCAGCACAATTTGATAACTCAACATCCCCCACGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAGACTTTAGAAGAATTTCTTTCTAAGGCTACTGGGACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCAATGGTGTGGCAGCAAGAGCTTGTGGTCTAGTGGGACTAGAACCCACTAGGGTTGCAGAAATCCTCAAAGATCGGCCTTTGTGGTTTCGCGATTGCCGAGCTGTTGATGTTCTCAATGTGCTGCCCACAGCAAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTATATGCACCAACCACATTGGCTCCCGCTCGAGACTTCTGGTTGTTGCGCTACACTTCTGTTTTAGAAGATAGCAGCTTAGTGATCTGTGAGAGGTCACTTAAAAATACTCAAAATGGTCCAAGCATGCCTCCTGTGCAGCATTTTGTTAGAGCAGAGATGCTGCCTAGTGGGTACCTGATCAGACCTTGTGAAGGAGGCGGTTCCATCATCCACATTGTTGATCATATGAATTTAGAGCCATGGAGTGTGCCAGAAGTGCTACGTCCACTGTACGAGTCATCTAAAGTACTGTCTCAGAAGACAACTATGGCGGCCCTACGTCATTTAAGGCAGATTTCACATGAAGTTTCTCCGTCCAACGTCAGTGGGTGGGGTAGAAGACCATCAGCACTACGAGCTCTTAGCCAAAGATTGAGCCGGGGTTTCAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACAATTGGCAATGATGGTGTAGATGATGTTACTATTCTCGTGAATTCATCCCCTGACAAGTTAATGGGTCTGAATCTTTCCTTTGCCAATGGATTTCCGTCTGTCAGTAATGCAGTGCTATGTGCCAAAGCATCGATGCTATTACAGAATGTGCACCCTGCCATTCTCCTTAGGTTCCTGCGGGAGCATAGATCAGAATGGGCAGACAACAATATGGATGCTTACACAGCTGCTGCTATTAAAGTTGGCCCTTGCAGCTTTTCAGGATCTCGTGTTGGAAACTATGGAGGTCAAGTTATACTCCCCCTAGCACACACAATTGAGCATGAAGAGTTTTTGGAAGTCATTAAATTGGAAGGAGTTGCTCATTCTCCTGATGACACAATAATGCCCAGAGAAATGTTTCTTTTGCAACTTTGCAGTGGAATGGATGAGAATGCTGTTGGCACCTGTGCTGAACTTATATCTGCTCCAATTGATGCTTCCTTTGCTGATGATGCCCCCCTTTTACCTTCTGGATTTCGCATCATTCCTCTTGAATCTGGAAAGGAAGCTTCCAGCCCCAATCGCACCCTTGACCTTGCATCTTCCCTTGACGTTGGTCCCAGTGGAAACCGAGCTTCAGATGAATGTGCTGGAAATTCCAGCTATATGAGATCTGTGATGACAATAGCATTTGAATTTGCATTTGAAAGCCATATGCAAGAGCATGTAGCAGCTATGGCACGTCAATATGTTCGGAGCATTATATCATCGGTTCAAAGGGTAGGATTAGCACTTTCTCCTTCTCATTTGAGTTCACATGCAGGGCTTAGGTCACCATTGGGTACTCCTGAAGCACAAACCCTTGCTCATTGGATCTGCAACAGTTATAGGTGCTACTTGGGTGTGGAGCTACTTAAATCTAATAACGAGGGGAATGAATCTTTGCTCAAGTCCTTGTGGCATCACTCAGATGCAATATTATGCTGCACTCTAAAGGCATTGCCAGTGTTTACTTTCTCGAACCAGGCTGGGCTTGACATGCTGGAGACCACCCTAGTTGCATTACAAGATATACCTTTGGAGAAAATATTTGATGATCATGAACGAAAAATTCTCTTTTCAGAGTTTCCCCAGATTATTCAACAGGGTTTTGCATGTCTTCAGGGTGGTATTTGTCTTTCAAGCATGGGGCGGCCTGTCTCATACGAAAGAGTCGTTGCTTGGAAGGTGCTGAATGAAGAAGAGAATGCTCATTGTATTTGCTTTATGTTTATGAACTGGTCTTTTGTTTGA 2532 0.4589 MSCKDGSRNGIGIGMDNGKYVRYTPEQVEALERLYHDCPKPSSIRRLQLIRECPTLSHIDPKQIKVWFQNRRCREKQRKESSRLQAVNRKLTAMNKLLMEEIDRLQKQVSQLVYENGYFRQHTTQNTKQQAIKDTSCESAVRSGQQHNLITQHPPRDASPAGLLSIAEETLEEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCNGVAARACGLVGLEPTRVAEILKDRPLWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDSSLVICERSLKNTQNGPSMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMNLEPWSVPEVLRPLYESSKVLSQKTTMAALRHLRQISHEVSPSNVSGWGRRPSALRALSQRLSRGFNEALNGFTDEGWTTIGNDGVDDVTILVNSSPDKLMGLNLSFANGFPSVSNAVLCAKASMLLQNVHPAILLRFLREHRSEWADNNMDAYTAAAIKVGPCSFSGSRVGNYGGQVILPLAHTIEHEEFLEVIKLEGVAHSPDDTIMPREMFLLQLCSGMDENAVGTCAELISAPIDASFADDAPLLPSGFRIIPLESGKEASSPNRTLDLASSLDVGPSGNRASDECAGNSSYMRSVMTIAFEFAFESHMQEHVAAMARQYVRSIISSVQRVGLALSPSHLSSHAGLRSPLGTPEAQTLAHWICNSYRCYLGVELLKSNNEGNESLLKSLWHHSDAILCCTLKALPVFTFSNQAGLDMLETTLVALQDIPLEKIFDDHERKILFSEFPQIIQQGFACLQGGICLSSMGRPVSYERVVAWKVLNEEENAHCICFMFMNWSFV 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01852 843 CDD START_ArGLABRA2_like 160 375 - -
Gma08g01852 843 Pfam START domain 166 374 IPR002913 GO:0008289
Gma08g01852 843 SUPERFAMILY Homeodomain-like 18 80 IPR009057 -
Gma08g01852 843 SMART HOX_1 16 82 IPR001356 GO:0003677
Gma08g01852 843 Coils Coil 88 115 - -
Gma08g01852 843 CDD bZIP 71 110 - -
Gma08g01852 843 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 843 IPR044830 GO:0003700
Gma08g01852 843 CDD homeodomain 19 79 IPR001356 GO:0003677
Gma08g01852 843 Gene3D - 197 377 IPR023393 -
Gma08g01852 843 ProSiteProfiles 'Homeobox' domain profile. 14 78 IPR001356 GO:0003677
Gma08g01852 843 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 843 - -
Gma08g01852 843 Pfam Homeodomain 19 77 IPR001356 GO:0003677
Gma08g01852 843 ProSiteProfiles START domain profile. 156 384 IPR002913 GO:0008289
Gma08g01852 843 Pfam MEKHLA domain 700 842 IPR013978 -
Gma08g01852 843 SMART START_1 165 375 IPR002913 GO:0008289
Gma08g01852 843 Gene3D - 14 85 - -
Gma08g01852 843 SUPERFAMILY Bet v1-like 165 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01852 Gma-Chr8 16669250 16677429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01852 1 795 Homeobox Transcription Factor Family AT1G52150 82.309 0.0 1346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma08g01852 START 8.4e-53 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01852 K09338 - gmx:100800697 1696.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01852 08 16669250 16677429 Gma08g01852 08 16669250 16677429 ECH
Gma07g00158 07 1355346 1362901 Gma08g01852 08 16669250 16677429 GST