Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01842 ATGATGCTTCTGTTGCAAAAACCCCATTGGGGGTTGCTTCTTCTCTTTCTCCTCTTTCAGCTTCACAGCAGCACCTGCTACCCCACAGAACCCATGAACTGTACGGACACAAGCCGTGTTTGCACTTCTTTCATGGCCTTCAAGCCTGGACCGAACCACACACTTGCTCTGATTCAAAGCATGTTTGATGTTTTGCCTGGTGACATCACAGTTGAAGGCACCGGTTGGGGTTACATGTTCATAAGGAAGAACTGTTCTTGTGCTGCTGGCATAAAAAATTACGTGTCCAACACCACTTTCACTGTGAAATCCAATGAGGGGTTGCTGTATGACATGGTGATGGATGCCTATGATGGCCTAGCTTTCCTTCCCAACACAACCAGGATGGCCAGGAATGGTGCTGTTGTGTCACTGACGTTGTTTTGTGGCTGTTCCAGTGGATTATGGAACTATTTGGTCAGTTATGTGATGAGAGATGGAGATAGTGTTGAGTCCTTGGCAAGCAGGTTTGGGGTTAGTATGGATAGCATTGAGAGTGTGAATGGCATTGGTAATCCTGATAATGTCACTGTTGGTTCACTTTATTATATACCCCTTGATTCTGTTCCTGGTGATCCTTATCCCCTAAATAATGCTGCTCCACCAGTTCCTGTTCCTTCCCCATCCTTCGATAATTTTTCAGCTGATCAAGTCAATCATAAGGCTCATGTACCCTATGGATGGATCGTTGGGGGTTTAGGAGTTGCGCTTGTTCTAATAATATTAACTGTTATTCTTTGTGTTTGTCTGAGATCATCAAATTGTTTTGCTGATACCAGAACTCATGAGAAAGATGCTGAGGGTAAGGTCTCTCATAAATTCCATATTCTTCGGAACCCAAGTTTTTTTTGTGGTTCTGGAAGGTACATATGTGGCAAACATGTTGATAAGAAGCAAACAGATGGTGAATCCAGCAATCACACAATTACCATTCCCAAAGCTTCAACTCTTGGGCCTGACGTATTTGACATGGATAAGCCTGTTGTTTTTACATATGAAGAGATTTTCTCCACAACTGATGGTTTCTCAGATACAAGTCTACTTGGGCATGGAACATATGGTTCTGTTTATTATAGCCTCCTCCGTGATCAGGAAGTTGCTATTAAAAGAATGACAGCTACTAAAACAAAAGAGTTTATGTCTGAGATGAAAGTTTTGTGCAAGGTTCATCATGCTAATCTGGTAGAATTGATTGGCTATGCAGCTAGTCATGAGGAGCTTTTCCTGGTATATGAATATGCTCAGAAGGGTTCACTCAAAAGCCATTTGCATGATCCTCAAAATAAGGGCCACTCCCCACTTTCTTGGATCATGAGGGTCCAGATTGCACTTGATGCTGCTAGGGGACTTGAATACATACATGAGCACACAAAAACTCATTATGTTCACCGTGATATCAAGACAAGTAACATTTTACTTGATGCTTCCTTTAGAGCAAAGATTTCAGATTTTGGGTTAGCAAAACTTGTTGGAAAAGCAAATGAGGGAGAAATTTCAACTACCAAAGTTGTTGGTACATATGGATATCTTGCTCCAGAATATTTGAGTGATGGTCTTGCGACCACTAAAAGTGATGTCTATGCATTTGGTGTTGTCCTTTTTGAGATCATATCAGGAAAAGATGCCATCATTCGATCTGAAGGCACAATGTCAAAAAATCCTGATAGACGTTCACTGGCATCCATAATGCTGGGAGTTCTTAGGAATTCACCTGATTCTATGAGCATGTCAAGCTTGAGAGAATATATTGATCCAAATATGATGGATCTGTATCCCCATGATTGTGTATTTAAGTTGGCCATGTTGGCAAAGCAATGTGTGGATGAGGACCCCATCTTACGACCTGATATGAGACAAGTTGTGATATCCCTTTCACAGATTCTGCTATCTTCAGTTGAGTGGGAAGCAACTCTAGCTGGGAATAGCCAGGTTTTCAGTGGCCTTGTTCAGGGAAGATAG 1998 0.4184 MMLLLQKPHWGLLLLFLLFQLHSSTCYPTEPMNCTDTSRVCTSFMAFKPGPNHTLALIQSMFDVLPGDITVEGTGWGYMFIRKNCSCAAGIKNYVSNTTFTVKSNEGLLYDMVMDAYDGLAFLPNTTRMARNGAVVSLTLFCGCSSGLWNYLVSYVMRDGDSVESLASRFGVSMDSIESVNGIGNPDNVTVGSLYYIPLDSVPGDPYPLNNAAPPVPVPSPSFDNFSADQVNHKAHVPYGWIVGGLGVALVLIILTVILCVCLRSSNCFADTRTHEKDAEGKVSHKFHILRNPSFFCGSGRYICGKHVDKKQTDGESSNHTITIPKASTLGPDVFDMDKPVVFTYEEIFSTTDGFSDTSLLGHGTYGSVYYSLLRDQEVAIKRMTATKTKEFMSEMKVLCKVHHANLVELIGYAASHEELFLVYEYAQKGSLKSHLHDPQNKGHSPLSWIMRVQIALDAARGLEYIHEHTKTHYVHRDIKTSNILLDASFRAKISDFGLAKLVGKANEGEISTTKVVGTYGYLAPEYLSDGLATTKSDVYAFGVVLFEIISGKDAIIRSEGTMSKNPDRRSLASIMLGVLRNSPDSMSMSSLREYIDPNMMDLYPHDCVFKLAMLAKQCVDEDPILRPDMRQVVISLSQILLSSVEWEATLAGNSQVFSGLVQGR 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01842 665 ProSiteProfiles LysM domain profile. 153 197 IPR018392 -
Gma08g01842 665 Gene3D Transferase(Phosphotransferase) domain 1 428 652 - -
Gma08g01842 665 Gene3D LysM domain 150 203 IPR036779 -
Gma08g01842 665 ProSitePatterns Protein kinases ATP-binding region signature. 361 382 IPR017441 GO:0005524
Gma08g01842 665 SUPERFAMILY Protein kinase-like (PK-like) 334 637 IPR011009 -
Gma08g01842 665 SMART serkin_6 355 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g01842 665 Pfam Protein tyrosine and serine/threonine kinase 360 635 IPR001245 GO:0004672|GO:0006468
Gma08g01842 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Gma08g01842 665 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 32 665 IPR044812 GO:0019199|GO:0045087
Gma08g01842 665 Pfam LysM domain 155 192 IPR018392 -
Gma08g01842 665 SMART LysM_2 154 198 IPR018392 -
Gma08g01842 665 PANTHER BNAA06G02020D PROTEIN 32 665 - -
Gma08g01842 665 Gene3D Phosphorylase Kinase; domain 1 331 426 - -
Gma08g01842 665 CDD LysM 153 197 IPR018392 -
Gma08g01842 665 ProSiteProfiles Protein kinase domain profile. 355 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g01842 665 SUPERFAMILY LysM domain 153 198 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01842 Gma-Chr8 16537315 16544168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01842 30 665 Receptor kinase-like Gene Family AT1G51940 69.565 0.0 873
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Gma08g01842 PK_Tyr_Ser-Thr 1.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01842 - - gmx:100796989 1302.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01842 08 16537315 16544168 Gma08g01842 08 16537315 16544168 ECH
Gma07g00145 07 1236000 1242184 Gma08g01842 08 16537315 16544168 GST
Gma13g03172 13 45847306 45853398 Gma08g01842 08 16537315 16544168 PCT
Gma15g00194 15 1570251 1575530 Gma08g01842 08 16537315 16544168 PCT
Gma08g01842 08 16537315 16544168 Gma13g03172 13 45847306 45853398 PCT
Gma08g01842 08 16537315 16544168 Gma15g00194 15 1570251 1575530 PCT