Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01841 ATGTGGCAAAGAAGCCACAAGTCATCAGAGGAGAGAAAGCTGGAGCTTAGGCTTGGTCCACCTGGTGAAGAGTCTCTCAATGAAAGCATCAGAAAAAGCAACAGAGAAAGAAATGAATCACAATTCACTCTTGGTTGCTTCTCAACTCAAAATTTTTTTACTTCTGACAAGCAAGGTCCAGGTGGGACTACGTTGCCCTCTGCATGGCCTTCCACATCCTATCATCACCAACACCAGGCTAAAGCTAAAGCTTCATCATTTCTTCAGCTCCAATCAAGTCCACAAAACATGATAGTGATGGGAAAGGATGTGTCACAATTCTCTTGTGTAGAGAAGAAGGTATTCTCACCCTCTTGTGCAAATCCAGCGGTGTCCAAAAGAACTTCTTCAGGTCCAGCAGTGGGTTGGCCTCCAATTCGTTCCTTCAGGAAGAACATTGCAAGTGGAAGCACTTCTAAGTTGCCTTCTGGGTCCCACCAGCAACATCAAAATGTTGTTCCATACAAGGTTGCTAGCCAAAAACCTACTGACAAATCTGGTAAAGGCTTGTTTGTGAAGATCAATATGGATGGTGTCCCCATTGGGAGAAAAGTGGACATCAATGCTTATGACAGCTATGAAAAACTTTCCTCTGCTGTTGATGAGCTCTTTAGGGGCCTCCTTGCAGAGATGAAGTTATCTCATATTGGCTCTTCCCAATGCTGTTCTGGTCAAAGAGATTCCTGTGCTGGTGGAATTCAAAACAAGGAACAGGAAGAGAAATCCAATAAGGGTTTATTGGTTGGAAGTGGGGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGAGATGTGCCGTGGCACATGTTTGTATCGACGGTGAAGAGGCTGAGGGTGTTGAAGAGTTCTGATCTTCCTGCTTTTACACTTGGTAGTAAGCAAGACTAG 942 0.4406 MWQRSHKSSEERKLELRLGPPGEESLNESIRKSNRERNESQFTLGCFSTQNFFTSDKQGPGGTTLPSAWPSTSYHHQHQAKAKASSFLQLQSSPQNMIVMGKDVSQFSCVEKKVFSPSCANPAVSKRTSSGPAVGWPPIRSFRKNIASGSTSKLPSGSHQQHQNVVPYKVASQKPTDKSGKGLFVKINMDGVPIGRKVDINAYDSYEKLSSAVDELFRGLLAEMKLSHIGSSQCCSGQRDSCAGGIQNKEQEEKSNKGLLVGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSDLPAFTLGSKQD 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01841 313 MobiDBLite consensus disorder prediction 1 19 - -
Gma08g01841 313 ProSiteProfiles PB1 domain profile. 182 300 IPR000270 GO:0005515
Gma08g01841 313 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 3 312 - -
Gma08g01841 313 MobiDBLite consensus disorder prediction 1 37 - -
Gma08g01841 313 SUPERFAMILY CAD & PB1 domains 178 297 - -
Gma08g01841 313 Gene3D - 177 311 - -
Gma08g01841 313 Pfam AUX/IAA family 14 303 IPR033389 -
Gma08g01841 313 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 312 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01841 Gma-Chr8 16523281 16525931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01841 186 311 B3 DNA Binding Superfamily AT4G23980 28.571 1.63e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gma08g01841 AUX_IAA 1.7e-66 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01841 K14484 - gmx:100793822 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00144 07 1223272 1226557 Gma08g01841 08 16523281 16525931 ECH
Gma08g01841 08 16523281 16525931 Gma08g01841 08 16523281 16525931 ECH
Gma07g00144 07 1223272 1226557 Gma08g01841 08 16523281 16525931 GST
Gma13g03168 13 45808994 45811705 Gma08g01841 08 16523281 16525931 PCT
Gma15g00198 15 1602234 1605496 Gma08g01841 08 16523281 16525931 PCT
Gma08g01841 08 16523281 16525931 Gma13g03168 13 45808994 45811705 PCT
Gma08g01841 08 16523281 16525931 Gma15g00198 15 1602234 1605496 PCT