Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01824 ATGAAGCTATCTCTCCACATTGAATTTGAAAAAGCCATGTTTTGGTTCTGGCACCAGTTGATCTACTATTGGGAATTGGTAACAAGGATCACTTTCTACTACAACATTCAACTAGATTTCTTGTACTTTCATTTTCATCAAAAATTACATTCTTCTATGGATGGTCTTAGTTGGGATGCCTCACAACTGTGGAGTACTATTCAGCAACCACCAGACTTTGAAGGAGGCTACTCCATGCCCCCCAATGTTCTCAATCAAATACAAGAGATGCAGAAAGCTCAAACAGGTCATGCATATTCAAATTCTGAAAGAGGGATTTATCACTCGGCAGGTGCCACTACCACTTCCTCTGAGATGATGGATGTGATGCAAAAACAAGACACAAATCTATCACAGCATGTGTCAATCATGCAAGTGAAACCAGCAGGAGCTGGAGCCAGTTGGGGAGAAACTTTAACATCCCAATCATACCCATCCCTATCAGTCAATAGACCTCACAGTATGAACCTGATTAGCAACTACATGCCAGATTTCTACATGGCCCACCAACAACAGCAGCAGCAACAACAACAACAACAACTTCAGTCTTTTGACTGCTTGATTTCAGCTACCAACAGCAACACAGACATCACTTCTGTTGAAGATGATGATGGGATCTCAATGATTTTATCTGACTGTGGAAACCTGTGGAACAACTTCAGTTATGGCAGTGCTGCGTCCACAGGTGAGTCTGAGAGCAATGCTTCCAATGGTAGAAACAAAGACATGCAGTGTAGTCCAGTCAATATTGAAGTTGATGAAACAGTTTCTCAAACAGTGGAATCAGAGGCTAATTGTTCAAAGAGGAGTCATGCCCATGATCAATCTAAAATGATCAAAGTTGGTGATTCCTGCTTCAGTATTGTTCAGAATTCTTCTCCTATTGAAGAAGGTGGTTTCAGACTTGTCTCAGATATTAATCAACCAGAATGCAAGAAATCAAGATGGGATATGAGTTCCTCCTCAAATAATATCAATTTCCAGCAACCAAATTCATCCATTTCTTCTTCCATTGAAGAGCCTGATCCAGAGGCAATTGCACAAATGAAGGAAATGATATATAGGGCTGCAGCTTTTAGGCCAGTGAACTTTGGGTTGGAGGTGGCTGAAAAGCCGAAGAGGAAGAATGTGAAGATATCAACTGATCCACAAACTGTGGCTGCAAGGCACAGAAGGGAGAGAATAAATGAGAAGATTAGGGTTTTGCAGAAGCTTGTGCCTGGGGGAAGCAAGATGGACACAGCATCAATGCTTGATGAGGCTGCAAACTACCTCAAGTTTCTCAGGTCACAGGTGAAGGCACTGGAAAGTCTAGGAAACAAAGTTGATGCAATGAATTGTCCTCCTACTAGCATTGCCTTCTCTTTCAACCCTTCTTTTCCCATGCAAACACCACCCCTCTGTCACATCCATCATTCCCATGGGGTCAAACAAAACAACCCCCCATGA 1488 0.4227 MKLSLHIEFEKAMFWFWHQLIYYWELVTRITFYYNIQLDFLYFHFHQKLHSSMDGLSWDASQLWSTIQQPPDFEGGYSMPPNVLNQIQEMQKAQTGHAYSNSERGIYHSAGATTTSSEMMDVMQKQDTNLSQHVSIMQVKPAGAGASWGETLTSQSYPSLSVNRPHSMNLISNYMPDFYMAHQQQQQQQQQQQLQSFDCLISATNSNTDITSVEDDDGISMILSDCGNLWNNFSYGSAASTGESESNASNGRNKDMQCSPVNIEVDETVSQTVESEANCSKRSHAHDQSKMIKVGDSCFSIVQNSSPIEEGGFRLVSDINQPECKKSRWDMSSSSNNINFQQPNSSISSSIEEPDPEAIAQMKEMIYRAAAFRPVNFGLEVAEKPKRKNVKISTDPQTVAARHRRERINEKIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQVKALESLGNKVDAMNCPPTSIAFSFNPSFPMQTPPLCHIHHSHGVKQNNPP 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01824 495 Coils Coil 431 451 - -
Gma08g01824 495 Gene3D - 397 453 IPR036638 GO:0046983
Gma08g01824 495 Pfam Helix-loop-helix DNA-binding domain 402 441 IPR011598 GO:0046983
Gma08g01824 495 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 392 441 IPR011598 GO:0046983
Gma08g01824 495 SMART finulus 398 447 IPR011598 GO:0046983
Gma08g01824 495 CDD bHLH_AtIND_like 393 451 - -
Gma08g01824 495 PANTHER TRANSCRIPTION FACTOR BHLH87 117 483 - -
Gma08g01824 495 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 117 483 IPR045843 GO:0003700|GO:0006355
Gma08g01824 495 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 398 454 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01824 Gma-Chr8 16278854 16280847 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01824 143 485 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 48.753 3.43e-86 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma08g01824 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01824 - - gmx:100775192 836.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01824 08 16278854 16280847 Gma08g01824 08 16278854 16280847 ECH
Gma07g00127 07 1078402 1080274 Gma08g01824 08 16278854 16280847 GST
Gma13g03159 13 45714516 45716483 Gma08g01824 08 16278854 16280847 PCT
Gma15g00208 15 1795858 1797195 Gma08g01824 08 16278854 16280847 PCT
Gma08g01824 08 16278854 16280847 Gma13g03159 13 45714516 45716483 PCT
Gma08g01824 08 16278854 16280847 Gma15g00208 15 1795858 1797195 PCT