Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01808 ATGATGGAAAGCAATGTTGAAGCAAAAAGCAATCATGGAAAAGTTTCTGCTTCTGGATCAGCATCAAATAAGTCACCACCAATGAAGAAGGATTTAATTTGCAAGTATTGCAACAAGAAGTTCAATAATTATCAAGCCTTGGGTGGACATCAGAATGCACACAAGAATGAAAGAGCAGCAGCACAAAAACAGAAGATTCTTAGCATGGCTTCTGCTTATAACAAAAATTCATATGCTGATGGGTTTGTTAATTCAAACCAATCTTATGGATTTGGTGGCAAAATATTAGGGGTGTCACCACTATCCATGACTCGTTTTAAGCCCCATTATTATAGTAATTGGTCTCATAATCATATGTCACATGTTGCATGGCCAAGGCACCAGATTTTGAATAGTGTTCAACCCACCATTCATCAGTTGCAGACTTTGATGATGGCTGATCAAGGGAGTGGATTTTATCGGCACCATAAATCATATCAACAACCTTTAAGTTTTCCTATACTTAGAGAAGGAGCAGTACTAAATTCAGGGTCGCAATCAGAGTTATTAAATCCTAGTTTATGTTATAAGGGGAATAATTTTGGTCAAGCAAGCAATTCTTCAATAATACCTCAGAATGGAATCATAGAGGGGTCTGAGGATTTGAATATCAAGACTTCTGGTGAAGCAAAAAACAGTTTTTCTTCGATGCTTGCCAATGGAGACGTGATGGAGCTTGATTTGACTCTCAAAATTTAG 738 0.3726 MMESNVEAKSNHGKVSASGSASNKSPPMKKDLICKYCNKKFNNYQALGGHQNAHKNERAAAQKQKILSMASAYNKNSYADGFVNSNQSYGFGGKILGVSPLSMTRFKPHYYSNWSHNHMSHVAWPRHQILNSVQPTIHQLQTLMMADQGSGFYRHHKSYQQPLSFPILREGAVLNSGSQSELLNPSLCYKGNNFGQASNSSIIPQNGIIEGSEDLNIKTSGEAKNSFSSMLANGDVMELDLTLKI 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01808 245 PANTHER ZINC FINGER PROTEIN KNUCKLES 16 244 - -
Gma08g01808 245 SUPERFAMILY beta-beta-alpha zinc fingers 30 59 IPR036236 -
Gma08g01808 245 MobiDBLite consensus disorder prediction 1 25 - -
Gma08g01808 245 Pfam C2H2-type zinc finger 33 55 - -
Gma08g01808 245 MobiDBLite consensus disorder prediction 1 26 - -
Gma08g01808 245 PANTHER ZINC FINGER PROTEIN JAGGED 16 244 IPR045320 GO:0003700
Gma08g01808 245 Gene3D Classic Zinc Finger 17 89 - -
Gma08g01808 245 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Gma08g01808 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01808 Gma-Chr8 16109517 16110254 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01808 34 95 C2H2 Transcription Factor Family AT5G57520 45.161 8.06e-10 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma08g01808 zf-C2H2_6 1e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01808 - - gmx:106799535 492.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00113 07 971122 971850 Gma08g01808 08 16109517 16110254 GST