Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01807 ATGAAATCTCTGTCAGAGAAGGTAGATGCACTTTCCCAGAATCTTGTGAGGGAAACGTCTGTACTAAATAATAAAGAAGACACTTTGAGGAGTGAAGAAGCCAACAAAGCAAATCTTGTTAAAAATATTGAAGAATTGAAGCATTCTGGAAAAGAGAAGTCCTCTGCTGTTAAAAAGGCTGAAGAGGGGGCAGCAGATCTGAAAAAGAAAGTTGATGAGCTCACAAAGAGTCTAGAGGAGCATGATAAAGAATACCAGAGCCGCCTGTTTGGATACAAGGCTAGAAGTGTTTTTGAGAGCTTCTCTACTAAAGGCAATCTTAGCAACCAAGATACAATGGAAAGCAATCATGGAAAAGTTGTTGTAGCTGCCGCATTATCAAATAAGTCGGCACCATTAATGAAGAAGGAATTTTCTTGCAAGTATTGTAATAAGAAGTTCAGTAGTTACCAAGCCTTGGGTGGGCATCATAATGCTCACAAGGCTGAAAGAGAAGCAGAAAAACAAAACAAGATTCTTAGCAACGCTTCTGCTTATTATAAAAAATCATTTGTTGGATCAAATTCAGGGTCACAATCACAGCCAAATCATATCCACACTTTTATGACCGGTGGGAGTGCATCTCATCAACAATACAAATCACATCAACCTTTGATTTCTTCTACCGTTGGAGAAGGACCAACAAATTCAGGGTCAAAGCCACATTCATCACATCCCAGTTTATGTGATAAAGGGAATTTTGGGCAAGCAACCGCTTCTTCAATGATACATCAGAAGGCAATCATAGAAGGGTCTGATTTGAATGTCAAGACTTCACGTGATCTTTTGAATTCTGCTCAAGAAAACAGTTCTTGTTCAGTGAATGGAGCAGTGGAGAATCTTGATTTGACTCTCAGGCTTCGAAGTCCCAATTTATTCTAA 921 0.3909 MKSLSEKVDALSQNLVRETSVLNNKEDTLRSEEANKANLVKNIEELKHSGKEKSSAVKKAEEGAADLKKKVDELTKSLEEHDKEYQSRLFGYKARSVFESFSTKGNLSNQDTMESNHGKVVVAAALSNKSAPLMKKEFSCKYCNKKFSSYQALGGHHNAHKAEREAEKQNKILSNASAYYKKSFVGSNSGSQSQPNHIHTFMTGGSASHQQYKSHQPLISSTVGEGPTNSGSKPHSSHPSLCDKGNFGQATASSMIHQKAIIEGSDLNVKTSRDLLNSAQENSSCSVNGAVENLDLTLRLRSPNLF 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01807 306 PANTHER ZINC FINGER PROTEIN KNUCKLES 119 300 - -
Gma08g01807 306 Pfam C2H2-type zinc finger 138 162 - -
Gma08g01807 306 MobiDBLite consensus disorder prediction 186 248 - -
Gma08g01807 306 SUPERFAMILY beta-beta-alpha zinc fingers 135 165 IPR036236 -
Gma08g01807 306 Coils Coil 22 49 - -
Gma08g01807 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 138 165 IPR013087 -
Gma08g01807 306 ProSitePatterns Zinc finger C2H2 type domain signature. 140 160 IPR013087 -
Gma08g01807 306 PANTHER ZINC FINGER PROTEIN JAGGED 119 300 IPR045320 GO:0003700
Gma08g01807 306 Gene3D Classic Zinc Finger 111 194 - -
Gma08g01807 306 Coils Coil 57 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01807 Gma-Chr8 16095640 16098116 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01807 138 203 C2H2 Transcription Factor Family AT5G14010 40.476 1.31e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma08g01807 zf-C2H2_6 1.5e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01807 K06674 - gmx:100788674 154.836