Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01780 ATGGCTGCTTCTAATTCTGCCGCTGTTGTTGGTAATGCTTcttcctctctctctctctctgttaccaaaaagtatgatgttttcatcagctttagaggagaggacacccgcggtgacttcacaagccatcttcatgccgctctcggcagaagcagcatcgaaacctacatagactacagaatccagaaaggagaggaggtttgggtcgaactcgtgaaagccatcaaaggctccactctcttcttggttatcttctcagaaaactacgcaaattctagttggtgtttgaatgaactggttgaactaatggaatgcagaaaacaagaagaagaggttcatgtaattccagtgttctacaaaatagacccatcgcaggtacgcaaacagactgggagttatCGCGCCGCAGTCGCAAACCAAAAGTGGAAGGACGCTCTCTATGAAGCAGCCAATTTATCTGGCTTCCATTCTCACACATACAGGACTGAAACTGACTTGATTGAAGATATTATCAAAGTTGTTTTGCAAAAGTTAAATCACAAGTACACATATGACTTTAGAGGCCTTTTCATATCTGATGAAAACTATACAagcattgaatctttattgaaaattgattcaatggaagttcgagtcattggaatttggggcaaaggaggtattggtaaaacaactcttgctgctgctatttttcataaagtttcttttcagtatgaaggcacttgcttcttagaaaatgtggcagaggaatcaaaaaggcatggactaaattacgcatgcaacaaacttttttctaagttactaagggaagatattaatattgacactaataaagtgataccctctaatgttccaaaaagactcaggcgtaagaaagttttcatcgtactagatgatgtgaacactccacaacttctagaaaatttggttggagcaggtgctgagtggctaggagctggtagcagagtcattgtgacaaccagagataggcatgtacttaaaagtagaggtgttgaaaaaattcacgaagtcaaggaaatgaactttcataactcccttaaacttttcagtttaaatgcctttggcaaaacctatcctacagaggaatatgaggagttatcaaaaagagtaatggtttatgccaaaggaatccctttagctttgaaagttttgggatcatttcttcgttccaaaagtgaaaatgaatgggatagtgcactgactaaattaaagaagattcctaatcaggaaattcagacagtgttgagattgagctatgatggattagatgatggagacaaaaacatttttctagacattgcttgtttttttaagggacaaaaaggagacagtgtgacaaaagtgttaaatgcctgcggtttttctgcagatatagggataaaaaatcttttagacaaagctcttatcactactactacagatatgcatgattctactacagatagttgcatagatatgcacgatttgatacaagaaatgggtagaggaattgttcgtgaagaatctattgacaatcctgggcagcgcagtagattgtgggatcctgaagaagtcaatgatgtactgacaaacaatacaGGAACTGGTGCAATCCAAGGAATATGGTTAGAAATGTCTCAAATTCAAGATATAAAGCTAAGCTCCAAATCATTCAGAAAGATGCCAAACTTGAGATTACTTGCTTTCCAATCCCTGAATGGAAACTTTAAAAGAATTAATTCAGTGTACCTTCCAAAGGGTCTTGAATTCTTACCTAAAAAATTACGATATTTGGGGTGGAATGGATGTCCATTAGAATCTCTACCATCGACTTTTTGCCCTGAGAAGCTTGTTGAGCTTTCCATGCGATACAGCAATGTGCAAAAACTTTGGCATGGAGTCCAGAATTTGCCAAATCTAGAGAAAATTGACCTTTTTGGCTGCATAAACCTAATGGAGTGTCCAAATCTGTCTCTTGCCCCAAAACTTAAACAAGTATCAATAAGCCACTGTGAAAGCTTGTCTTACGTTGATCCGTCAATTTTGTCCCTCCCGAAGCTAGAAATTTTAAATGTGAGTGGATGCACGTCGCTTAAGAGCCTTGGCAGCAATACTTGGTCACAATCTCTCCAACATTTGTATTTAGAAGGATCAGGTTTGAATGAACTGCCCCCATCAGTTTTGCATATAAAAGATCTAAAAATCTTTGCCTCTTCAATTAATTATGGTCTTATGGATCTTCCTGAAAACTTTTCCAATGATATTGTACTCTCTGCACCAAGGGAACATGATCGTGACACTTTCTTCACCTTACATAAGATACTGTATAGTTCTGGCTTCCAGTCAGTAACAGGTCTAACTTTTTACAATTGTCAAAGCTTGGGCGAAATCCCAGACAGCATCTCGCTGTTATCGTCATTGCTATTCTTAAGCTTCTTGCATAGCAACATCATAAGCTTACCCGAAAGCCTGAAGTATCTTCCAAGACTCCATCGTCTTTGTGTCGGTGAATGTAAAATGCTTCGACGTATACCTGCACTTCCACAGTCCATTCAGTGCTTCCTCGTCTGGAACTGCCAATCTCTTCAGACGGTGCTAAGTTCAACGATTGAACCATTGGAATCACCCAACGGCACTTTTCTGCTTGCTAACTGCATAAAATTGGATGAACATTCATTTGATGCAATAATTGGCGAACCACCACCATCAGAAGTATTAGAAGATGCATTCACGGATAATTATATTTATCAAACAGCAAAGCTTTGCTACTCTTTACCAGCTAGAAGTGGCAAAGTTCGAGAGTGGTTCCATTGCCACTTCACACAGTCTTTGGTCACTGTTGAAATTCCCCCTAATCTGTTGGGTTTCATTTTCTACTTGGTTGTTTCTCAAGTCAAATTATGCCACATTGGTTGCTGTGGAAGTATAGGATGTGAATGCTCTTTGGAAACCAGCCAGAATGAAAGGATCAGTATAACAAGTTTCGTTTTAGATAAAAATTCCATGCTTATTCATCCACTTCCATTTGAATTTATGACAGATCATGTGTTTGTATGGTATGATGGACGAATTTGCAAGCAGATAATGGAACTAGTTAAAGAGAGGAGAGCCATTAGCAGTGGTGATCCAAAGCTTAGATTTAAATTCTTCATTCAAACCCGACATAACCAGGAAGCAGTGAACATAAAAGAGTGTGGATTTCGTTGGATTTGTTCCTTTGAAGAAGGAGGATGCAAGCCCGAGAGAAGCAGGGAAATTCATGAAGTAGAAGCCAATGTGGTCACAAATAAAGTGGAGGGCTCTGAGTCTAATGAGCAAAAAGAAACTTCACACTTGAAAGCAGAAGAGACAGAAGACTTGAGTTATCGTCTTGAAGAAATCATGCATATTGGATTTGGAGGAGACCGCATGTAA 3414 0.2378 MAASNSAAVVGNASSSLSLSVTKKYDVFISFRGEDTRGDFTSHLHAALGRSSIETYIDYRIQKGEEVWVELVKAIKGSTLFLVIFSENYANSSWCLNELVELMECRKQEEEVHVIPVFYKIDPSQVRKQTGSYRAAVANQKWKDALYEAANLSGFHSHTYRTETDLIEDIIKVVLQKLNHKYTYDFRGLFISDENYTSIESLLKIDSMEVRVIGIWGKGGIGKTTLAAAIFHKVSFQYEGTCFLENVAEESKRHGLNYACNKLFSKLLREDINIDTNKVIPSNVPKRLRRKKVFIVLDDVNTPQLLENLVGAGAEWLGAGSRVIVTTRDRHVLKSRGVEKIHEVKEMNFHNSLKLFSLNAFGKTYPTEEYEELSKRVMVYAKGIPLALKVLGSFLRSKSENEWDSALTKLKKIPNQEIQTVLRLSYDGLDDGDKNIFLDIACFFKGQKGDSVTKVLNACGFSADIGIKNLLDKALITTTTDMHDSTTDSCIDMHDLIQEMGRGIVREESIDNPGQRSRLWDPEEVNDVLTNNTGTGAIQGIWLEMSQIQDIKLSSKSFRKMPNLRLLAFQSLNGNFKRINSVYLPKGLEFLPKKLRYLGWNGCPLESLPSTFCPEKLVELSMRYSNVQKLWHGVQNLPNLEKIDLFGCINLMECPNLSLAPKLKQVSISHCESLSYVDPSILSLPKLEILNVSGCTSLKSLGSNTWSQSLQHLYLEGSGLNELPPSVLHIKDLKIFASSINYGLMDLPENFSNDIVLSAPREHDRDTFFTLHKILYSSGFQSVTGLTFYNCQSLGEIPDSISLLSSLLFLSFLHSNIISLPESLKYLPRLHRLCVGECKMLRRIPALPQSIQCFLVWNCQSLQTVLSSTIEPLESPNGTFLLANCIKLDEHSFDAIIGEPPPSEVLEDAFTDNYIYQTAKLCYSLPARSGKVREWFHCHFTQSLVTVEIPPNLLGFIFYLVVSQVKLCHIGCCGSIGCECSLETSQNERISITSFVLDKNSMLIHPLPFEFMTDHVFVWYDGRICKQIMELVKERRAISSGDPKLRFKFFIQTRHNQEAVNIKECGFRWICSFEEGGCKPERSREIHEVEANVVTNKVEGSESNEQKETSHLKAEETEDLSYRLEEIMHIGFGGDRM 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01780 1137 SUPERFAMILY Toll/Interleukin receptor TIR domain 19 155 IPR035897 -
Gma08g01780 1137 Gene3D - 187 342 IPR027417 -
Gma08g01780 1137 Gene3D - 347 430 IPR042197 -
Gma08g01780 1137 PRINTS Disease resistance protein signature 212 227 - -
Gma08g01780 1137 PRINTS Disease resistance protein signature 287 301 - -
Gma08g01780 1137 PRINTS Disease resistance protein signature 381 395 - -
Gma08g01780 1137 PRINTS Disease resistance protein signature 682 698 - -
Gma08g01780 1137 Pfam NB-ARC domain 199 418 IPR002182 GO:0043531
Gma08g01780 1137 SMART till_3 24 152 IPR000157 GO:0007165
Gma08g01780 1137 ProSiteProfiles TIR domain profile. 23 178 IPR000157 GO:0007165
Gma08g01780 1137 Pfam TIR domain 24 184 IPR000157 GO:0007165
Gma08g01780 1137 Pfam Leucine Rich Repeat 616 635 IPR011713 -
Gma08g01780 1137 Gene3D - 21 185 IPR035897 -
Gma08g01780 1137 Gene3D Ribonuclease Inhibitor 529 707 IPR032675 -
Gma08g01780 1137 Gene3D Ribonuclease Inhibitor 708 888 IPR032675 -
Gma08g01780 1137 SUPERFAMILY L domain-like 493 870 - -
Gma08g01780 1137 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 17 1109 - -
Gma08g01780 1137 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 440 IPR027417 -
Gma08g01780 1137 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 1109 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01780 Gma-Chr8 15831592 15837318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01780 19 833 WRKY Transcription Factor Family AT4G12020 33.293 1.33e-110 379