Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01775 ATGGAGATGAAGGGTTTTATGTTCCACCACCAACAGCAGCAACAAGTAGTAGTGGAGGAAAACATGTCAAATTTGACTTCTGCATCTGGTGAAGCTAGTGCTGCTTCCTCAGGTAACAGAACTGAAATTGGAACCAGTTACATGGCTCCACCACCATCTCAGACTCAACAATCAAAGAAAAAGAGAAACCTCCCTGGCAACCCAGACCCTGATGCTGAGGTAATAGCCTTGTCCCCCAAGAGTCTTCTTGCCACAAACAGGTTCATTTGTGAGATCTGTAACAAAGGATTTCAAAGAGATCAGAACCTTCAGCTTCACAGAAGAGGGCACAATTTGCCATGGAAACTGAAGCAGAGAACAAGCAAAGAGGTGAGGAAGAAGGTGTATGTGTGTCCAGAGCCAAGTTGTGTACATCATGACCCATCAAGGGCCCTGGGGGACCTAACTGGGATCAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCCAAGAAGTATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAAACCTGTGGCACTAGGGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCTTTCTGTGATGCATTAGCAGAGGAGAGTGCAAGAGCCATCACAAACCCACTTCTTCCCCCACAACAACAACAACAACAACCTTCTTCTTCCTCTCACCACCAAATGAGTACTCTCCAAACCCAATTCAACCCTCAAAATAACCTCCATGCCTTCCCATTGAAAAAAGAGCAGCAAAGTTTCAATGTTAGGACAGAAATGCCCCCTTGGCTTGGCCCACCAGCTGCAACAGTAGTTGTTGATCATCACCATCATCATCTCTCCTCATCATCCTCATCCATAATGTTCTCTCCTCCTCACCAAGAAAACCCTAATCCTAACCCTAGCCTTGGTCCCACTCTTGCTGCCTACAAAACAGTCGCTAACCCCCCACACATGTCAGCCACAGCATTGCTGCAGAAAGCAGCTCAGATGGGTGCAACCATGAGCAGAAGTGGTTCCTCACCAGCCATGACTGGGCCCCACCATCATGCTCACGTGTCCTATTCTGCTGATTCTGCCAGTGCTCATTTTGGGTTGAACTTGTCCTCACGTGAAGACACCACCACCTCAACAACAACAACAACAACTACTAAAACTGCTACAGTGTTCAGCCATGGCTTATTATCATCACCATTGGGGAATAAAGCTGGTGCTGCTGTGTCTTCTTCTGCACCATCCCTTCTTCATGATGTTATCAACTCTTTCTCAGTTTCTCCTTCTGCCTTTGAGGGAACCCCTTTTGAGGATGCATTCATTCAGAGCTCAAAGAAACTCGATGATGATGATCATCATAACTTGTATTTGCATGACACATTCTCAAAAACAAGTAGTAGTACTGGTGCAGCTGGAAATATTAACGAAGGGTTGACTAGAGATTTCTTGGGTCTTAGGCCCCTCTCTCATACTGATATTCTCACCATTGCCGGCATTGGAAATTGCATCCATGATCACCAAAAtcagtctcaaaagccatggcaagGAGGATACCCAAATACAAGATGA 1611 0.4538 MEMKGFMFHHQQQQQVVVEENMSNLTSASGEASAASSGNRTEIGTSYMAPPPSQTQQSKKKRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITNPLLPPQQQQQQPSSSSHHQMSTLQTQFNPQNNLHAFPLKKEQQSFNVRTEMPPWLGPPAATVVVDHHHHHLSSSSSSIMFSPPHQENPNPNPSLGPTLAAYKTVANPPHMSATALLQKAAQMGATMSRSGSSPAMTGPHHHAHVSYSADSASAHFGLNLSSREDTTTSTTTTTTTKTATVFSHGLLSSPLGNKAGAAVSSSAPSLLHDVINSFSVSPSAFEGTPFEDAFIQSSKKLDDDDHHNLYLHDTFSKTSSSTGAAGNINEGLTRDFLGLRPLSHTDILTIAGIGNCIHDHQNQSQKPWQGGYPNTR 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01775 536 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 110 IPR013087 -
Gma08g01775 536 Gene3D Classic Zinc Finger 142 221 - -
Gma08g01775 536 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 515 - -
Gma08g01775 536 Gene3D Classic Zinc Finger 69 135 - -
Gma08g01775 536 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 24 515 - -
Gma08g01775 536 MobiDBLite consensus disorder prediction 24 73 - -
Gma08g01775 536 SMART c2h2final6 164 184 IPR013087 -
Gma08g01775 536 SMART c2h2final6 88 110 IPR013087 -
Gma08g01775 536 SMART c2h2final6 129 159 IPR013087 -
Gma08g01775 536 Pfam Zinc-finger double-stranded RNA-binding 88 110 IPR022755 -
Gma08g01775 536 MobiDBLite consensus disorder prediction 24 63 - -
Gma08g01775 536 SUPERFAMILY beta-beta-alpha zinc fingers 87 184 IPR036236 -
Gma08g01775 536 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01775 Gma-Chr8 15791393 15796765 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01775 1 352 IDZ Gene Family AT1G55110 56.693 1.51e-126 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma08g01775 zf-C2H2_jaz 7.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01775 K25870 - gmx:100808344 993.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00084 07 693425 696474 Gma08g01775 08 15791393 15796765 GST
Gma13g03133 13 45484702 45487500 Gma08g01775 08 15791393 15796765 PCT
Gma15g00232 15 2028618 2031597 Gma08g01775 08 15791393 15796765 PCT
Gma08g01775 08 15791393 15796765 Gma13g03133 13 45484702 45487500 PCT
Gma08g01775 08 15791393 15796765 Gma15g00232 15 2028618 2031597 PCT