Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01751 ATGGCAGGTTTGGCTCCAGAGGGAACACAATTCGATGGTCGCCAATATGATGCTAAGATGAGTGAATTGCTTTCCACTGATGGGCAAGAATTCTTCACCTCTTATGATGAAGTGTATGACAGCTTTGATGCAATGGGATTGCAAGAGAATCTTCTGCGAGGCATATATGCTTATGGTTTTGAGAGGCCTTCTGCTATACAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGACTGGATGTGATTCAACAGGCTCAGTCTGGAACAGGAAAGACAGCAACATTTTGTTCTGGAATTTTGCAGCAGCTTGATTATGGATTGGTTCAGTGCCAGGCTTTGGTTTTGGCACCAACAAGGGAGCTAGCACAGCAGATCGAGAAAGTTATGCGAGCTCTTGGTGATTACTTGGGAGTTAAGGTCCATGCTTGTGTTGGTGGGACAAGTGTTCGTGAGGATCAGCGCATTCTCCAAGCTGGTGTCCATACTGTTGTTGGCACTCCTGGGCGAGTGTTTGACATGCTGCGGAGGCAGTCTCTTCGCCCAGATTGCATAAAGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAGATCTATGACATCTTCCAGCTGCTGCCATCCAAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCGCCAGAAGCCCTTGAAATTACAAGGAAGTTCATGAATAAGCCAGTGAGAATCCTGGTAAAGCGTGATGAACTGACCCTGGAGGGTATAAAGCAGTTTTATGTCAATGTTGACAAGGAAGAGTGGAAGCTGGAGACATTATGTGACCTTTATGAGACTCTGGCTATCACTCAGAGTGTCATTTTTGTGAATACCAGGCGCAAGGTGGACTGGCTCACTGACAAGATGCGAAGCAATGACCACACAGTCTCTGCCACCCATGGTGACATGGACCAAAACACACGTGATATTATCATGCGTGAATTCCGGTCCGGCTCTTCTCGAGTTCTCATTACCACGGACCTTCTGGCCCGTGGTATCGATGTGCAGCAAGTGTCTCTGGTCATAAACTATGATCTGCCAACCCAACCTGAAAACTATCTCCACCGCATAGGACGTAGTGGTCGATTTGGAAGAAAAGGAGTTGCTATAAACTTTGTCACGACAGATGATTCCAGGATGCTGTCTGATATTCAGAAGTTCTACAATGTGACTGTAGAGGAGCTGCCATCAAATGTTGCTGATTTACTCTGA 1242 0.4614 MAGLAPEGTQFDGRQYDAKMSELLSTDGQEFFTSYDEVYDSFDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHTVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDSRMLSDIQKFYNVTVEELPSNVADLL 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01751 413 PANTHER RNA HELICASE 23 413 - -
Gma08g01751 413 Gene3D - 249 413 IPR027417 -
Gma08g01751 413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Gma08g01751 413 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
Gma08g01751 413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 413 IPR001650 -
Gma08g01751 413 SMART helicmild6 293 374 IPR001650 -
Gma08g01751 413 SMART ultradead3 59 256 IPR014001 -
Gma08g01751 413 CDD SF2_C_DEAD 253 383 - -
Gma08g01751 413 Pfam Helicase conserved C-terminal domain 266 374 IPR001650 -
Gma08g01751 413 Gene3D - 30 248 IPR027417 -
Gma08g01751 413 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 23 413 - -
Gma08g01751 413 CDD DEADc_EIF4A 44 242 - -
Gma08g01751 413 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Gma08g01751 413 Pfam DEAD/DEAH box helicase 65 226 IPR011545 GO:0003676|GO:0005524
Gma08g01751 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 394 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01751 Gma-Chr8 15592146 15595443 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01751 1 413 Eukaryotic Initiation Factors Gene Family AT1G72730 89.130 0.0 771
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01751 K03257 - gmx:100817948 819.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01751 08 15592146 15595443 Gma08g01751 08 15592146 15595443 ECH
Gma07g00068 07 560502 562731 Gma08g01751 08 15592146 15595443 GST
Gma13g03116 13 45357497 45360639 Gma08g01751 08 15592146 15595443 PCT
Gma15g00249 15 2162664 2165285 Gma08g01751 08 15592146 15595443 PCT
Gma08g01751 08 15592146 15595443 Gma13g03116 13 45357497 45360639 PCT
Gma08g01751 08 15592146 15595443 Gma15g00249 15 2162664 2165285 PCT