Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01749 ATGGGGAATCAGAAGCAGAAGTGGACGCAGGACGAAGAAGATGCTCTCATCGCCGGCGTTGAAAAGCACGGCCCCGGAAAGTGGAAGAACATTCTCAAGGATCCCCAATTCGCCCCTTTCCTCACTTCCCGTTCCAACATCGACCTCAAGGATAAATGGCGCAATTTGAGCGTCAGCAACGGTGCTCAGGGCTCCAAAGAAAAATCTAGGGTTCCCAAGCTTAAAGCCCTCCCTGCTCCTCCTGCTCCTACCGCCACTCCTCAGAACGCCGCTCCTGCTCTGCAAAACGCAGCATCTGATGTCACTCCCCCAGATGCTTCTCAGAATGACCAAGATGCCAAAAACCCTCCAAGGTATAATGCAATGATTTTTGAAGCTCTATCAGCGCTGAAAGATAGTAATGGATCTGACATGAATGCCATCATTAAATTCATGGAGGTACAAAATGGTTACAAGGTGAAAAAGGAAGCCTCCTCGGGGACAAAATCACCTTCACCAAAACCAAAGGATGTCCGGCCACCACAACCACAACAGCAATCCCCAGCTTCTGTCTTAATGACTAATGACACAATAAAGGAAGCTGCGGATACTGCAGCCTACAGAGTTGCTGATGCTGAAAGTAAATCATATCTGGCTGCAGAAGCAGTAAAGGAGGCTGAAAAAATATCATTGCTGGTTGAACATAGTGATTCAATGTTACAGCTAGCAAAAGATATATATGAACAATGTTCCCGTGGTGAAATTATCCTCTTGGCTTAA 759 0.4677 MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGAQGSKEKSRVPKLKALPAPPAPTATPQNAAPALQNAASDVTPPDASQNDQDAKNPPRYNAMIFEALSALKDSNGSDMNAIIKFMEVQNGYKVKKEASSGTKSPSPKPKDVRPPQPQQQSPASVLMTNDTIKEAADTAAYRVADAESKSYLAAEAVKEAEKISLLVEHSDSMLQLAKDIYEQCSRGEIILLA 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01749 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 62 IPR017930 -
Gma08g01749 252 Gene3D - 8 83 - -
Gma08g01749 252 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Gma08g01749 252 MobiDBLite consensus disorder prediction 58 117 - -
Gma08g01749 252 Pfam linker histone H1 and H5 family 117 155 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gma08g01749 252 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 115 214 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gma08g01749 252 MobiDBLite consensus disorder prediction 1 28 - -
Gma08g01749 252 PANTHER SINGLE MYB HISTONE 4 1 146 IPR044597 GO:0003691
Gma08g01749 252 PANTHER SINGLE MYB HISTONE 4 147 251 IPR044597 GO:0003691
Gma08g01749 252 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Gma08g01749 252 SUPERFAMILY "Winged helix" DNA-binding domain 114 151 IPR036390 -
Gma08g01749 252 SMART sant 4 59 IPR001005 -
Gma08g01749 252 MobiDBLite consensus disorder prediction 88 115 - -
Gma08g01749 252 Gene3D - 111 163 IPR036388 -
Gma08g01749 252 Coils Coil 252 252 - -
Gma08g01749 252 MobiDBLite consensus disorder prediction 153 184 - -
Gma08g01749 252 CDD SANT_TRF 6 56 - -
Gma08g01749 252 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Gma08g01749 252 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 146 - -
Gma08g01749 252 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 147 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01749 Gma-Chr8 15579103 15584708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01749 1 251 Single Myb Histone (SMH) Gene Family AT1G17520 40.614 4.79e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gma08g01749 Myb_DNA-binding 1.5e-10 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00066 07 544773 549628 Gma08g01749 08 15579103 15584708 GST