Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01735 atggatgatggtggttgctatgatggagatggatatggttgtagtgacggtgacgacaacgacaatgctgagagtgatggtgacgacaacgacaatgctgagagtgatggtgacgacaacgacaatgatgataggattgacgaagCAAAGGGAATATGTTGTTTGGTTGCTACTGAAATGAGACAAGGTGAAGCCAATTCGACCCAGGGTCCCAAGGTCAATTTGTTGCAGCATGCCAATGCTCTTGAGAATTTCTCCTCCCAAGCCAAATTTTTGAGCTCCACTTTTCTGTTTTCTGTCCCACCTAAGAAGCCGCCACACCACGCAGAACCAAACCCTGGGACTGCCGGGTTTGTATTTCGACGAAGTGAAACTATTCAAGGTTCACACAGAGTACAAGTCGAGAAGGCTTTGACTGCTCATTCAAGTCTACAAAATTCTAGTAGGATCTATGTCCAACCAGGAAAAACACAGGTTACTCCTCAGCTTCATGAAGATAGGAGAACAACTTCCTTCCATGGACGCTATGAGAATGACAGCCGGATATGTCCTGATGTCACTGTAACTCCAATTGTTAACAATCATAGTTCTCGGGGTTTGGATGGTTTGGTGAACAATCATACTAATTACACAGGCCAAATCATCAAGTCTTCTAACTGCATGGCTGTAGATATTGACGATGATGATGATGCCATACTTGCGAACATTGATGTTGACCAAATTGTTGAGGAACACCAGTCAACTTGCACTCCCAAACCATCAATATCCAAGTTTCCTCCTATAACACCAACTGCAGATAAAGATAATTTTGCTAGACAGGGGGATAATGTTTTGCCACCAGAGTTGTGTTTAGATTGCATCCATGGTTACAAGTTAGGGTTTTGCCCTGAAGCAGCAAGTCATTTGCAGGAAATGAAGGATAATCTAATTGCAATCTCTAATGAGCTGCTTGACAATGGTGAAAACCTCAATTCTACACAGATAGCAAAGCTTCGCCATGATAGGTCACAGCTCAATAAGCAAATTCAGCAGCTTGAAAAATATATTCATTCTGGAAATCTTAATGAGGAAAGGCAAAAGTCACATTTTTCTGCATCCACGGCACCACCTACATCTTTTGTGTATGAAACACCTCAGCAAACTGTCCTCTGTAATGGATCTAAGAGATATGATACCCAGGCTTATATGGGTAATGAGACATATGGGTCATCGTTCCAGTCTCTTCCATCTTTTTCTGTAGATAATTGTAACATGCCATTAGGTTCGGTGGGGAGGGAAGCGTTCATCCCAAAGATTATTGAAGTTAATTACATTGAAGGTTCTGGAGACAAACGCTGGAGCAGCTACGATTTTCCTTGGACAAAAGAGTTAGAGGTTAATAATAAAAAAGTATTTGGAAATCACTCATTTCGCCCCAATCAAAGAGAGATCATTAATGCCTCAATGAGTGGATGTGATGTTTTTGTTCTGATGCCCACTGGTGGTGGAAAGAGTCTGACCTATCAGTTACCAGCTCTTATTCGTCCTGGTATAACATTAGTAATTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCACCTATTGCAGGCAAATATACCAGCTGCTTACTTAAGTGCCAATATGGAATGGGCTGAACAGCAGGAGATCCTCCGAGAACTTAATTCTGATTATTGTAAATACAAGTTATTATATGTGACACCCGAAAAGGTTGCCAGAAGTGATAATCTTCTACGCCACTTGGACAATTTACATTTTCGTGAATTGCTTGCAAGGATAGTAATTGATGAGGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGACTTGGTATATTGAAGCAGAAATTCCCAAATACTCCTGTTTTAGCTTTAACAGCTACAGCAACAGCTAGTGTAAAAGAAGATGTAGTGCAAGCACTTGGTCTTGTTAACTGCATCATTTTTCGGCAAAGTTTTAATCGCCCAAACTTATGGTATTCTGTTGTCCCCAAGACTAAAAAGTGTTTGGAGGACATTGACAAATTCATTAGGGTGAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCACGTATGGACTGTGAAAAGGTTGCTGAAAAATTACAGGAATGTGGGCATAAATGTGCATTTTATCATGGTAGCATGGACCCTGCTCAACGTGCTTCTGTTCAAAAGCAGTGGAGCAAAGATGAGATCAATATAATTTGTGCTACTGTGGCATTTGGAATGGGTATTAACAAACCTGATGTCCGCTTTGTAATCCATCATTCCCTCCCAAAATCTATTGAAGGCTATCATCAGgaatgtggacgagctggtagagatggtcaacgttcatcctgtatattatactataactatagtgattatATACGAGTTAAGCATATGTTAAGCCAAGGAGCAATAGAGCAAAGTTCCATGACATCTGGATACAACCGTTCAAATATGATAAATTCAGGAAGGATACTAGAAACAAACACTGAAAACCTTGTGCGAATGGTCAGTTATTGTGAAAATGATGTTGATTGTCGGCGCCTTCTGCAGCTTGCTCATTTTGGGGAGAAGTTCAATTCTTCAACTTGTCAGAAAACATGTGATAATTGCTTAAAGATCACAAGTTTCATTGAGAAGGATGTCACTGAGATTGCAAATCAATTGGTTGAACTTGTTAAGCTAACAGGACAGAGGTTCTCATCATCTCATATATTAGAAGTGTATCGTGGTTCCTTAAGCCAAATGGTCAAGAAACACCGGCATGAGATTGTGAGCCTTCATGGTGCTGGAAAGCATCTAGCTAAGGGTGAGGCTTCCCGCATATTGCATCATCTTGTTGTTGAGGATTTTCTTGGGGAGGAAGTAAAGAAAAGTGATTTTTATGGATCTGTATCATCAATATTGAAGGTAAATGAGCCCAAGGTCCGTAATCTGTTTGCAGGCCAGAGAATTATATTGAGATTCCCATCCTCTGTAAAGGCATCAAAACCAGGGAAATCTGATGCAACTCCAGCTAAGGGTTCTCTGACCTCTGAAAAGCTGAATGTTATGCAAATTGACCCTCCTTCACCTCAAACTGAAGTGGATCATATTCTTTCAGCTAAGTTATACAATGCCCTGCGGTTGTTGAGGAAAAGTCTTGTTACAGAAGCTGGAGAGGGTGTCATGCCTCACCACATATTTGGTAATGCTACATTGCTTCTGATAAGCAAGAGAGTGCCGAGAACAAAAGAAGAACTCCTTGATATCAATGGCATTGGCAAGGCTAAGGTAAGCAAGTATGGGGATCAGTTACTGGAAACCATTGAAAAAACCGTAAATGAACATTACAAGTTGGACAACATCGGTAGCGGTAGCAAAGGAAGTGCAGATTCTACCAAAAAGAGACGAGTGCCAAATGGAAATTCAGATACAAATGTTGAGGATGATGACGCCCCCACCAAAAGTACAGGTCGTTCAAAGAAAAGGACGGTAAAGAGACAAAATAGGAAAGGTGTGATATATGATTCTCCAGAGGAAGATTATTTTCAAGGATGCCCTGATGAAGACCTAGATTTTGACATCATAGAAATTGATGCATTAGATCAAGTGACTTGTAAAAATACTGCAGGAAGAGTACTACCTCAATGGACAGCATCTTGA 3660 0.3817 MDDGGCYDGDGYGCSDGDDNDNAESDGDDNDNAESDGDDNDNDDRIDEAKGICCLVATEMRQGEANSTQGPKVNLLQHANALENFSSQAKFLSSTFLFSVPPKKPPHHAEPNPGTAGFVFRRSETIQGSHRVQVEKALTAHSSLQNSSRIYVQPGKTQVTPQLHEDRRTTSFHGRYENDSRICPDVTVTPIVNNHSSRGLDGLVNNHTNYTGQIIKSSNCMAVDIDDDDDAILANIDVDQIVEEHQSTCTPKPSISKFPPITPTADKDNFARQGDNVLPPELCLDCIHGYKLGFCPEAASHLQEMKDNLIAISNELLDNGENLNSTQIAKLRHDRSQLNKQIQQLEKYIHSGNLNEERQKSHFSASTAPPTSFVYETPQQTVLCNGSKRYDTQAYMGNETYGSSFQSLPSFSVDNCNMPLGSVGREAFIPKIIEVNYIEGSGDKRWSSYDFPWTKELEVNNKKVFGNHSFRPNQREIINASMSGCDVFVLMPTGGGKSLTYQLPALIRPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWAEQQEILRELNSDYCKYKLLYVTPEKVARSDNLLRHLDNLHFRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWYSVVPKTKKCLEDIDKFIRVNHFDECGIIYCLSRMDCEKVAEKLQECGHKCAFYHGSMDPAQRASVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCILYYNYSDYIRVKHMLSQGAIEQSSMTSGYNRSNMINSGRILETNTENLVRMVSYCENDVDCRRLLQLAHFGEKFNSSTCQKTCDNCLKITSFIEKDVTEIANQLVELVKLTGQRFSSSHILEVYRGSLSQMVKKHRHEIVSLHGAGKHLAKGEASRILHHLVVEDFLGEEVKKSDFYGSVSSILKVNEPKVRNLFAGQRIILRFPSSVKASKPGKSDATPAKGSLTSEKLNVMQIDPPSPQTEVDHILSAKLYNALRLLRKSLVTEAGEGVMPHHIFGNATLLLISKRVPRTKEELLDINGIGKAKVSKYGDQLLETIEKTVNEHYKLDNIGSGSKGSADSTKKRRVPNGNSDTNVEDDDAPTKSTGRSKKRTVKRQNRKGVIYDSPEEDYFQGCPDEDLDFDIIEIDALDQVTCKNTAGRVLPQWTAS 1219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01735 1219 CDD DEXHc_RecQ 461 660 - -
Gma08g01735 1219 SMART RQC_2 886 996 IPR018982 GO:0006260|GO:0006281|GO:0043138
Gma08g01735 1219 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 592 601 IPR002464 -
Gma08g01735 1219 Gene3D HRDC domain 1033 1120 IPR044876 -
Gma08g01735 1219 Gene3D - 434 660 IPR027417 -
Gma08g01735 1219 MobiDBLite consensus disorder prediction 1129 1157 - -
Gma08g01735 1219 ProSiteProfiles HRDC domain profile. 1036 1118 IPR002121 GO:0003676
Gma08g01735 1219 Pfam RecQ zinc-binding 795 877 IPR032284 -
Gma08g01735 1219 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 478 653 IPR014001 -
Gma08g01735 1219 MobiDBLite consensus disorder prediction 1118 1172 - -
Gma08g01735 1219 Pfam Helicase conserved C-terminal domain 679 783 IPR001650 -
Gma08g01735 1219 Gene3D - 884 993 IPR036388 -
Gma08g01735 1219 Pfam HRDC domain 1040 1108 IPR002121 GO:0003676
Gma08g01735 1219 PANTHER DNA HELICASE RECQ FAMILY MEMBER 157 1187 - -
Gma08g01735 1219 Gene3D - 661 880 IPR027417 -
Gma08g01735 1219 Pfam RQC domain 883 997 IPR018982 GO:0006260|GO:0006281|GO:0043138
Gma08g01735 1219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 659 927 IPR027417 -
Gma08g01735 1219 Pfam DEAD/DEAH box helicase 472 640 IPR011545 GO:0003676|GO:0005524
Gma08g01735 1219 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 4A 157 1187 - -
Gma08g01735 1219 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 462 937 IPR004589 GO:0004386|GO:0006310
Gma08g01735 1219 SMART ultradead3 466 669 IPR014001 -
Gma08g01735 1219 SMART helicmild6 703 784 IPR001650 -
Gma08g01735 1219 MobiDBLite consensus disorder prediction 1 45 - -
Gma08g01735 1219 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 678 825 IPR001650 -
Gma08g01735 1219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 445 802 IPR027417 -
Gma08g01735 1219 SUPERFAMILY HRDC-like 1040 1113 IPR010997 GO:0000166|GO:0044237
Gma08g01735 1219 MobiDBLite consensus disorder prediction 14 43 - -
Gma08g01735 1219 Coils Coil 328 348 - -
Gma08g01735 1219 CDD SF2_C_RecQ 661 793 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01735 Gma-Chr8 15407209 15417791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01735 692 807 Eukaryotic Initiation Factors Gene Family AT3G19760 24.138 2.73e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01735 K10901 - gmx:100800006 2307.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01735 08 15407209 15417791 Gma08g01735 08 15407209 15417791 ECH