Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01646 ATGTCTTCTTCTCTTTCAATTCCGATTCCATTTCCGATCGCAATGGATTCTGCGTCGTCTTTGACGGTGACACAGATAGCGCTTTTCAAACCTCTGAAGCAGAAGCATCATTTCGTCAGAGGCAGAGTCAGTGTTATTAGACCACTTCATCGCCGCCTCAACTCCGTTTCGCCTCCGCGGTGCTCTTCCGCCGGTGACGACGCCGTCATTACTCTCCATGTTGGGGGAATGATGTGCGAGGGATGTACAAATAGCGTCAAAAAAATTCTAGAAAGCCGACCGCAAGTGTTATCTGCTCATGTAAATTTGACATCCGAGACAGCAACCGTTTCCCTTGTGCCTGAACaaaaaactgcaccagatggtctaaagcaattgggggaggaacttgcacagcatttaactacatgtggttttacttctacccttcgagtgacagatcaagaagatagcagctga 459 0.3682 MSSSLSIPIPFPIAMDSASSLTVTQIALFKPLKQKHHFVRGRVSVIRPLHRRLNSVSPPRCSSAGDDAVITLHVGGMMCEGCTNSVKKILESRPQVLSAHVNLTSETATVSLVPEQKTAPDGLKQLGEELAQHLTTCGFTSTLRVTDQEDSS 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01646 152 PANTHER ATP7, ISOFORM B 58 142 - -
Gma08g01646 152 Pfam Heavy-metal-associated domain 71 128 IPR006121 GO:0046872
Gma08g01646 152 ProSitePatterns Heavy-metal-associated domain. 74 103 IPR017969 GO:0046872
Gma08g01646 152 Gene3D - 66 147 - -
Gma08g01646 152 PANTHER COPPER-TRANSPORTING ATPASE PAA1, CHLOROPLASTIC 58 142 - -
Gma08g01646 152 SUPERFAMILY HMA, heavy metal-associated domain 66 119 IPR036163 GO:0046872
Gma08g01646 152 ProSiteProfiles Heavy-metal-associated domain profile. 69 143 IPR006121 GO:0046872
Gma08g01646 152 CDD HMA 71 130 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01646 Gma-Chr8 14657797 14660473 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01646 69 146 Primary Pumps ATPases AT4G33520 66.667 1.03e-28 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01646 K17686 - gmx:100527143 289.656