Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01627 ATGGGTCTGCATCATCATCATCACAGAAAGTTGATGCCATTGCCAGAAAAAATCTGCGGGTTAATTTGTCATGTGAAGAAGTCCGAGCCTTGTTCCTCAGATTGCAAAGTTTGCCTTAAGATCTGTCTAACCAATCCCCAATATCCTTCTTTTTATTATTCTCCTCCACCACCACAAGTTCCTCCTTTTCAATCATATGATGATGTTGTTGATGGCGCAGATCAAGCATACAACCACAAAATCTCCACCTATTTGTTCCTTGCACTTGCTCTTCTAACTGCTGCTTTCTTTGTCGTTTCTTGTCGTGCCATCTATACCAGGTTTAGCTCAAGGAGGAGGGTATCATCACCATCAACATCAAGGCGCCAAACCCAAACACACCATGATGATGATGATTTTGTTGATGATGAAGAGCATCATGGCCGTATGGTTGACCACCCCATATGGTATATCCGCACCCTTGGCCTTCAGCAATCAATTATCAATGCCATCACAGTTTGTAAGTATAAGAAAGGAGAAGGTTTGATTGAAGGAACGGATTGTGCTGTTTGCTTGAGTGAGTTCCAAGAGGATGAGAATCTCAGACTTTTGCCAAAATGTCAGCATGCTTTTCATCTTCCTTGTATTGATACCTGGCTTAGGTCTCATACCAATTGTCCCATGTGCCGGGCTCCAATTGTTGCTGAGATTGAGTCTTCTAGTTTTGTTGATTCAAATTCCTTGGAAAATAGCCATATGGAAGTTTTGGAGAATAGTGCTCCTGGTGGTTCTGAATTGATGAATAATAATAGGGTAGAGGAAGTAGGCCAATTGGAAGAAGTTGTTGATGATGATGGAGTGAGGGTTTGTGAAACTGAAACCCCGGTTGAAGATGTGGCCGCAAGCATTCGTCCTAGAAGATCTTTTTCTCTGGATTCTTTTTCTGTTGCAAATTTCAATCTTGCTCTTGCAACAGCAGAATCTTATGGCAACTCAAAAAGAGTGCAGGGAGGTGTGGATGATATTGATGATCCTACTGCTTCAAAGGGGGTTATTGGAAACTATTTGGCAACTTCTTCCAAAGGTAGCTCCTCTTTCAGGTTAACAAGATATCTGCAGCAGGGTATTCCTAGTTCTTCAGTGAAACGGTCACAGTCCTTCAATGGGAAATACCTTCTATCCCGGTATGGCCGCAGTCAGAAGAAGCCAAATGCTCCTCTGAGAAGCTTTTGA 1212 0.4249 MGLHHHHHRKLMPLPEKICGLICHVKKSEPCSSDCKVCLKICLTNPQYPSFYYSPPPPQVPPFQSYDDVVDGADQAYNHKISTYLFLALALLTAAFFVVSCRAIYTRFSSRRRVSSPSTSRRQTQTHHDDDDFVDDEEHHGRMVDHPIWYIRTLGLQQSIINAITVCKYKKGEGLIEGTDCAVCLSEFQEDENLRLLPKCQHAFHLPCIDTWLRSHTNCPMCRAPIVAEIESSSFVDSNSLENSHMEVLENSAPGGSELMNNNRVEEVGQLEEVVDDDGVRVCETETPVEDVAASIRPRRSFSLDSFSVANFNLALATAESYGNSKRVQGGVDDIDDPTASKGVIGNYLATSSKGSSSFRLTRYLQQGIPSSSVKRSQSFNGKYLLSRYGRSQKKPNAPLRSF 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01627 403 MobiDBLite consensus disorder prediction 123 137 - -
Gma08g01627 403 Pfam Ring finger domain 180 223 IPR001841 -
Gma08g01627 403 CDD RING-H2_PA-TM-RING 180 223 - -
Gma08g01627 403 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 394 IPR044675 -
Gma08g01627 403 ProSiteProfiles Zinc finger RING-type profile. 181 223 IPR001841 -
Gma08g01627 403 MobiDBLite consensus disorder prediction 115 137 - -
Gma08g01627 403 SMART ring_2 181 222 IPR001841 -
Gma08g01627 403 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 394 - -
Gma08g01627 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 232 IPR013083 -
Gma08g01627 403 SUPERFAMILY RING/U-box 175 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01627 Gma-Chr8 14491258 14492545 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01627 3 278 C3H Transcription Factor Family AT1G72220 41.695 3.37e-49 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01627 - - gmx:100781245 749.199