Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01626 ATGTCTGAGTCGGACACGAAGAAGAAGAAGCAGCAGCAGAGCAGCGGCGGAAAGCATGAAGGAGAAGAAGGGTTGATGATCAAGCCCCAGAGCTTCACTCCCCCCATCGACACCTCCCAATGGCCCATTCTCCTCAAAAACTACGAGCGcCTCAACGTCCGCACCGGCCACTACACCCCCATTCCCTCCGGCTACTCCCCCCTGAAGCGCCCCCTCTCCGAGTACCTCAAATACGGCGTCCTCAACCTCGACAAGCCCGCCAACCCTTCCTCCCACGAGGTCGTGGCCTGGATCAAGCGCCTCCTCCGCGTCGAAAAAACCGGCCACTCCGGTACCCTCGACCCCAAGGTCACCGGTAACCTCATCGTCTGCATCGACCGCGCCACCCGCCTCGTCAAGTCCCAGCAGGGCGCCGGTAAAGAATACGTCTGCATCGCCCGCCTCCACTCCGCCGTCCCCGACATCTCCAAGGTCTCCCGCGCCCTCGAAACCCTTACCGGCGCCGTCTTCCAGCGTCCCCCCTTGATCTCCGCCGTCAAGCGCCAGCTCCGGATTCGGACCATCTACGAAAGTAAGCTCCTTGAGTATGACCCTGATAGGCACTTGGTTGTTTTCTGGATTTCCTGTGAGGCTGGTACCTATGTTAGGACCATGTGTGTTCACTTAGGGTTGCTTCTTGGTGTGGGTAGCCACATGCAGGAGCTTAGGAGGGTTAGGTCCGGGATCATGGGGGAGAAGGATAACATGGTCAGCATGCATGATGTCATGGATGCTCAGTGGGTTTATGATAATTATAGGGATGAGACTTATTTGAGGAGGGTTGTTATGCCCTTGGAGATTCTCTTGACTAGCTATAAGAGGCTTGTTGTTAAGGACTCTGCTGTCAATGCTATTTGTTATGGTGCTAAGTTCATGATTCCTGGGTTGCTTAGGTTTGAGAATGATATTGATGTTGGGGAGGAGGTTGTACTTATGACTACTAAGGGTGAGGCTATTGCTCTTGGGATTGCTGAGATGACTACTGCTGTTATGGCCACTTGTGATCATGGGGTTGTGGCCAAGATCAAGAGGGTGGTCATGGATAGGGATACTTATCCAAGGAAGTGGGGTTTGGGACCCAGGGCTTCCATGAAGAAGAGGCTTATTAGTGAAGGGAAGCTCGATAAGCATGGGAAGCCCAATGAGAAGACTCCACAGGAGTGGCTTAGGAATCTGGTTTTGCCAACTGGTGGGGATAGCATGATTGCTGGCTTGGCTGCTGCGCCGGAACCTGAGGACGACAAACTTCAGAAGAAGGAGGAGGGAGATGGGGAAGGGAAGAAGAGAAAGAAGCATGAAAGCACAGATAGCCTGGTTGCTGTTCCTGCTAAGAAGGCGAAAGTGGTAGATGAAGTGGAAGAGCTTGAAAAGCTAGAAAAGGTGAAGGTGAAGAAGGTAGATGAAGAGACTGTGGAGGTTGAAGTTGagaagaaagagaagaagaagaaaaagaagaagGATAAGGAGAACAGCGAGGTGGCCTCTTCGGATGAGGAGAAAACTGAGAAGAAGAAGAAGAATAAGGTTGAAGATGGTTCGCCGGAGTTAGACAAGTCTGAGAAGAAAAAGAAAAAGAAGAAAGACAAAGCTGCTGCCGCCGCTGCTGAAATTAGCAATGGAAAGGTGGATGACAGTAAAGCTGATAAGAGTGAAAAGAAGAAGAATAAGAAAAAGAAAAACAAAGATGCTGAGGAAGAATAG 1740 0.5052 MSESDTKKKKQQQSSGGKHEGEEGLMIKPQSFTPPIDTSQWPILLKNYERLNVRTGHYTPIPSGYSPLKRPLSEYLKYGVLNLDKPANPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDISKVSRALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTYVRTMCVHLGLLLGVGSHMQELRRVRSGIMGEKDNMVSMHDVMDAQWVYDNYRDETYLRRVVMPLEILLTSYKRLVVKDSAVNAICYGAKFMIPGLLRFENDIDVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKRLISEGKLDKHGKPNEKTPQEWLRNLVLPTGGDSMIAGLAAAPEPEDDKLQKKEEGDGEGKKRKKHESTDSLVAVPAKKAKVVDEVEELEKLEKVKVKKVDEETVEVEVEKKEKKKKKKKDKENSEVASSDEEKTEKKKKNKVEDGSPELDKSEKKKKKKKDKAAAAAAEISNGKVDDSKADKSEKKKNKKKKNKDAEEE 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01626 579 SMART DKCLD_2 37 95 IPR012960 -
Gma08g01626 579 TIGRFAM CBF5: putative rRNA pseudouridine synthase 45 370 IPR004802 GO:0006396
Gma08g01626 579 MobiDBLite consensus disorder prediction 424 451 - -
Gma08g01626 579 Pfam PUA domain 286 358 IPR002478 GO:0003723
Gma08g01626 579 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4 18 578 - -
Gma08g01626 579 SMART pua_5 286 360 IPR002478 GO:0003723
Gma08g01626 579 Coils Coil 529 549 - -
Gma08g01626 579 Gene3D PUA domain 38 369 IPR036974 GO:0003723
Gma08g01626 579 Pfam DKCLD (NUC011) domain 38 95 IPR012960 -
Gma08g01626 579 MobiDBLite consensus disorder prediction 472 579 - -
Gma08g01626 579 MobiDBLite consensus disorder prediction 472 535 - -
Gma08g01626 579 Coils Coil 559 579 - -
Gma08g01626 579 MobiDBLite consensus disorder prediction 420 457 - -
Gma08g01626 579 MobiDBLite consensus disorder prediction 1 25 - -
Gma08g01626 579 Coils Coil 479 501 - -
Gma08g01626 579 MobiDBLite consensus disorder prediction 554 579 - -
Gma08g01626 579 SUPERFAMILY Pseudouridine synthase 38 283 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Gma08g01626 579 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 18 578 IPR004802 GO:0006396
Gma08g01626 579 ProSiteProfiles PUA domain profile. 285 360 - -
Gma08g01626 579 Pfam tRNA pseudouridylate synthase B C-terminal domain 216 282 IPR032819 -
Gma08g01626 579 Pfam TruB family pseudouridylate synthase (N terminal domain) 99 215 IPR002501 GO:0006396
Gma08g01626 579 Gene3D Pseudouridine synthase 71 277 - -
Gma08g01626 579 CDD PseudoU_synth_hDyskerin 77 259 - -
Gma08g01626 579 TIGRFAM unchar_dom_2: uncharacterized domain 2 281 357 IPR004521 GO:0003723
Gma08g01626 579 MobiDBLite consensus disorder prediction 1 29 - -
Gma08g01626 579 SUPERFAMILY PUA domain-like 285 366 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01626 Gma-Chr8 14486149 14488218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01626 4 465 NAC Transcription Factor Family AT3G57150 72.745 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01626 K11131 - gmx:100780706 902.123