Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01624 ATGGCGCATTGCTCACTTTTCCTCTCTCTCAGACGAAATAGCGGTTTGGCTTGTCTCCTGAACCGAACAAGATTCGTGTCTTCGGGTGCTGTGAGCAGTGATTTGGTGGAAGAGAGTGTGGAAGGTGTTGATGATGACCTAAGGAGCAGAATCTTCAGGCTTAGGCTCCCCAAGCGAAGCGCCACCAACGTTCTTCAGAAATGGGTCCTCCAAGGGAATCCTGTTACGCTCTCTCAGCTTCGGGATATATCCAAAGAGCTTCGAAGATCTCAACGTTACAAACACGCTTTGGAGATATCTGAGTGGATGGTTAGCCATGAGGAATACGAGTTATCAGACTCTGATTATGCAGCCCGCATAGATTTGACTACCAAAGTTTTTGGCATTGATGCTGCAGAGCGCTACTTTGAGGGTCTACCTCTTGCTACAAAGACTGCTGAAACATACACAGCACTCCTCCATTCTTACGCAGGAGCAAAATTGACTAAAAAGGCTGAGGAACTTTATCAAAGGATAAAGGATTCAAACCTTTCCTTTGATGCCCTTACTTACAACGAAATGATGACTCTTTACATGTCAGTGGGGCAGTTTGAAAAGGTCCCATCGGTTGTTGAAGAACTGAAACAACAAAAGGTTTCCCCTGATATCTTTACTTACAATCTATGGATAAGTTCCTGTGCCGCCATTCTTAATATTGATGAAGTTAGGAGGATTCTTGATGAAATGAGTCATGGTGCTGGTTCTAATGAAAGTTGGATAAGATATTTGAACCTGGCCAATATATATATTAGTGTAGGTCATCTTGATAACGCAAGTTCCAACACACTTGTTGAGACTGAGAAAAGGATCACCCAAAGGCAATGGATAACTTATGACTTCTTAATCATTCTATACGGTGGGTTGGGAAGTAAGGATAAACTTGATCAGATATGGAATTCCTTAAGAATGACCAAACAGAAAATGATTAGCAGGAATTACATCTGCATCATTTCTTCCTATCTGATGCTTGGTCATACCAAAGAAGTGGGTGAAGTTATTGATCAATGGAAGCAATCAACGACCACGGATTTTGATATGCTTGCCTGTAAAAAGATTATGGTTGCTTTTAGGGACATGGGCTTGGCTGAAATAGCCAACAACTTGAATATGATTCTCATTGAGAAGAACCTCAGTCTTGGAAGTGATTAA 1188 0.4175 MAHCSLFLSLRRNSGLACLLNRTRFVSSGAVSSDLVEESVEGVDDDLRSRIFRLRLPKRSATNVLQKWVLQGNPVTLSQLRDISKELRRSQRYKHALEISEWMVSHEEYELSDSDYAARIDLTTKVFGIDAAERYFEGLPLATKTAETYTALLHSYAGAKLTKKAEELYQRIKDSNLSFDALTYNEMMTLYMSVGQFEKVPSVVEELKQQKVSPDIFTYNLWISSCAAILNIDEVRRILDEMSHGAGSNESWIRYLNLANIYISVGHLDNASSNTLVETEKRITQRQWITYDFLIILYGGLGSKDKLDQIWNSLRMTKQKMISRNYICIISSYLMLGHTKEVGEVIDQWKQSTTTDFDMLACKKIMVAFRDMGLAEIANNLNMILIEKNLSLGSD 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01624 395 TIGRFAM PPR: pentatricopeptide repeat domain 148 180 IPR002885 -
Gma08g01624 395 TIGRFAM PPR: pentatricopeptide repeat domain 183 216 IPR002885 -
Gma08g01624 395 Pfam Pentatricopeptide repeat domain 169 226 IPR002885 -
Gma08g01624 395 Gene3D Tetratricopeptide repeat domain 54 180 IPR011990 GO:0005515
Gma08g01624 395 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
Gma08g01624 395 PANTHER BNAC02G00860D PROTEIN 1 392 - -
Gma08g01624 395 Gene3D Tetratricopeptide repeat domain 181 271 IPR011990 GO:0005515
Gma08g01624 395 PANTHER OS12G0527900 PROTEIN 1 392 - -
Gma08g01624 395 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 214 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01624 Gma-Chr8 14471394 14474265 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01624 50 349 EF-hand Containing Proteins AT1G02150 33.223 6.08e-54 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01624 - - gmx:100779635 776.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01624 08 14471394 14474265 Gma08g02152 08 19965447 19973505 PCT
Gma08g02152 08 19965447 19973505 Gma08g01624 08 14471394 14474265 PCT