Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01508 ATGGTCATGGAAACAAGCGGAGTGAGAAAGAATGTTGGGATACTCCTCCTCTACCTCACTTTGGCTGCAATTTCTCTCACTCATTGTGATGCAGATAGATCAATGAGACTATTGAGAGGGCCCAAACATAGAAGAAATACAACCAACAAGAACCCAAAGAAGTTGAAAACGGTTAAGCATTTTGATGTGAATCCAACCATATTCTCATCAAATGTACAACCCTATAGTCTCAGCTCCCCATTCTCTTTGCCCCCTTATGAATCACTTGCTCCAATCCCATTGCCAGAAAACAGCCCTCCATTTTGTGTGTTTCCACCACCTGGCACTCCTTCCACCACCATTCCCACACCCACAGGCTTTGAACCCACCACACCATCACCTCCTTACTATGACACCTCACCACCAAGCCCAACAACCATAACACCTGGCCCACCAGAGTCCTTCCCCACACCAACTCCGGAAACCGTTCCAggcccacccagcatcaccccgggctcgccagagcccgtgctcaaccctcccatcattattccaagcccacctgactcctcaatgggcccacccgggatcacaccaggctctcctgagcccgtactcaatcctcccatcattattccaagcccacctgactcctcaatgggcccacccTACTTTGAGCCCACCCCACCATTCATAATCCCTTCCCCCACGGGTGGCATCACCCCAGGCCCACCAAGCACTGTTCCATCCCCCACTGAAGGCACTGTCCCAAGCCCAAGTGTGTTTCAGCCACCTGTGGTGTACCCTCCACCGAGTGTGCCACCACCACCCAACTATGCCCCTAGGACCACCTTGTGGTGTGTGGCTAAGCCCTCAGTCCCAGACCCAATCATCCAAGAGGCCATGAACTATGCTTGCTGGTCAGGAGCAGACTGCACTTCAATTCAGCCCAATGGGCCGTGCTATGAGCCCAACACTGTGTATGCACATGCTTCATACGCTTTCAATAGTTATTGGCAAAGGACCAAAGGTGCTGGTGGCAATTGTGAATTTGGAGGCACAGCGATGCTGGTTGCAGTTGATCCTAGCTTTGATGGGTGCCACTTCATCTACAACTGA 1098 0.4235 MVMETSGVRKNVGILLLYLTLAAISLTHCDADRSMRLLRGPKHRRNTTNKNPKKLKTVKHFDVNPTIFSSNVQPYSLSSPFSLPPYESLAPIPLPENSPPFCVFPPPGTPSTTIPTPTGFEPTTPSPPYYDTSPPSPTTITPGPPESFPTPTPETVPGPPSITPGSPEPVLNPPIIIPSPPDSSMGPPGITPGSPEPVLNPPIIIPSPPDSSMGPPYFEPTPPFIIPSPTGGITPGPPSTVPSPTEGTVPSPSVFQPPVVYPPPSVPPPPNYAPRTTLWCVAKPSVPDPIIQEAMNYACWSGADCTSIQPNGPCYEPNTVYAHASYAFNSYWQRTKGAGGNCEFGGTAMLVAVDPSFDGCHFIYN 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01508 365 MobiDBLite consensus disorder prediction 229 250 - -
Gma08g01508 365 PANTHER CARBOHYDRATE-BINDING X8 DOMAIN SUPERFAMILY PROTEIN 13 100 - -
Gma08g01508 365 PANTHER CARBOHYDRATE-BINDING X8 DOMAIN SUPERFAMILY PROTEIN 202 365 - -
Gma08g01508 365 MobiDBLite consensus disorder prediction 229 245 - -
Gma08g01508 365 Pfam X8 domain 278 349 IPR012946 -
Gma08g01508 365 MobiDBLite consensus disorder prediction 105 198 - -
Gma08g01508 365 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 13 100 IPR044965 GO:0004553|GO:0005975
Gma08g01508 365 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 202 365 IPR044965 GO:0004553|GO:0005975
Gma08g01508 365 MobiDBLite consensus disorder prediction 120 198 - -
Gma08g01508 365 PRINTS Proline rich extensin signature 83 95 - -
Gma08g01508 365 PRINTS Proline rich extensin signature 103 119 - -
Gma08g01508 365 PRINTS Proline rich extensin signature 125 137 - -
Gma08g01508 365 PRINTS Proline rich extensin signature 137 158 - -
Gma08g01508 365 PRINTS Proline rich extensin signature 167 183 - -
Gma08g01508 365 Gene3D - 274 361 - -
Gma08g01508 365 SMART X8_cls 278 362 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01508 Gma-Chr8 13208495 13210204 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01508 276 362 Glycoside Hydrolase AT3G13560 46.591 9.58e-23 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01508 - - gmx:100794886 535.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01508 08 13208495 13210204 Gma08g01508 08 13208495 13210204 ECH
Gma15g02501 15 52652042 52653794 Gma08g01508 08 13208495 13210204 GST