Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01453 ATGGCGGATCCGAAAGCCTACTGGTGCCACGAGTGCGACATGAGCGTGTCCCTGACGCTCCCACCCTCCCCTCTCCTCTGCCCGCACTGCCACACCCACTTCCTCGAGCTCATGGACTCCCCAACCCTCTCCCAAAACGACACCGAATCCTCCCTCTTCGACGTCGTTTTCCAAGACGCTCTCTTACTCCTCAACCCCCCTTCCTCAAAACCCCGCCCCCTCCCCTCCCTCCACTTCACCCCCTCCCTCCTcTCCTCCCTCGACCCCAACGGCGTCGTTCGCTGCGCCGTCTGCAAAGACCAAATTACCCCCCACGCCGAAGCCAAACAATTACCCTGCAAACACTTATACCACTCCGATTGCATCACGCCGTGGCTCGAACTCCACGCCTCGTGTCCGCTATGCAGAGGATTTCTACGGGCTGAGGACCACGCTCAACCACATTGCCTCGCGCCACGCGCTCATCCAAGAGAACGAGAATCGCGGCGCCCAGATTGGGGAAACTCAAGGTGGCGATTCGGCTTGCTGATCATATTGGTTCATAAGGTATATAGTGTATTAAAATAA 567 0.5767 MADPKAYWCHECDMSVSLTLPPSPLLCPHCHTHFLELMDSPTLSQNDTESSLFDVVFQDALLLLNPPSSKPRPLPSLHFTPSLLSSLDPNGVVRCAVCKDQITPHAEAKQLPCKHLYHSDCITPWLELHASCPLCRGFLRAEDHAQPHCLAPRAHPRERESRRPDWGNSRWRFGLLIILVHKVYSVLK 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01453 188 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 4 44 - -
Gma08g01453 188 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 66 154 - -
Gma08g01453 188 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 4 44 - -
Gma08g01453 188 Pfam Ring finger domain 95 136 IPR001841 -
Gma08g01453 188 SUPERFAMILY RING/U-box 88 145 - -
Gma08g01453 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 140 IPR013083 -
Gma08g01453 188 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 66 154 - -
Gma08g01453 188 SMART ring_2 95 135 IPR001841 -
Gma08g01453 188 Pfam zinc-ribbon 7 38 IPR039525 GO:0061630
Gma08g01453 188 ProSiteProfiles Zinc finger RING-type profile. 95 136 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01453 Gma-Chr8 12528243 12530099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01453 5 136 C3H Transcription Factor Family AT3G60080 34.197 1.93e-22 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01453 K11982 - gmx:100782164 264.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g02555 15 53510229 53513014 Gma08g01453 08 12528243 12530099 GST