Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01442 ATGGAGCATTTGGGCCAAATAGAAGAGCGTATTAGATGCCTAGAAGCAGTAGTTTTCAGGGCTAGGCAGCGTCAGAGGCAGCGACCGAGTCATGCTCCAATTCAGGTAACTAACTATGCAGGAGAATTGGGAACAGTAGCTGATCTACCAGCCGAAGAAGAAAGGTTGCATCAAGAGTTTGGTGGTATTGATGTTGGAGGAGAGATGGTGGGAGATGGGAGAACGTGTAAAAGGAAGGCTAGCTATTTGGTTGCTAAAGCATTGGGTGTGGAAACCAGTCAGGGTGAGGGTTTTGCAACAAATTTGTTTCATTGTAATGTATGCTTGGACAGGGCAAGAGATCCGGTTTTGACCTGTTGTGGTCACTTGTTTTGCTGGCCATGCTTTCATAAGTTGTCGTATGCTTATTCAGATGTCAGGGAATGTCCGGTTTGTAAAGGAGATGTCCCTGAAGAAGGAATTGTCCCAATATATGGCAATGTAAGTGTTGATAACAGTGGCAAGTTTGACTTGAATGAAACTGATTCGACAGTTCCTGCTCGACCTCGTCCACATAGAATTGAGAGTATTAGGCAGCGGTTCAGATATTGA 591 0.4484 MEHLGQIEERIRCLEAVVFRARQRQRQRPSHAPIQVTNYAGELGTVADLPAEEERLHQEFGGIDVGGEMVGDGRTCKRKASYLVAKALGVETSQGEGFATNLFHCNVCLDRARDPVLTCCGHLFCWPCFHKLSYAYSDVRECPVCKGDVPEEGIVPIYGNVSVDNSGKFDLNETDSTVPARPRPHRIESIRQRFRY 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01442 196 SMART ring_2 105 145 IPR001841 -
Gma08g01442 196 Pfam zinc-RING finger domain 104 146 IPR001841 -
Gma08g01442 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 188 IPR013083 -
Gma08g01442 196 SUPERFAMILY RING/U-box 100 158 - -
Gma08g01442 196 ProSiteProfiles Zinc finger RING-type profile. 105 146 IPR001841 -
Gma08g01442 196 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 5 194 - -
Gma08g01442 196 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 5 194 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01442 Gma-Chr8 12410879 12411536 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01442 54 195 C3H Transcription Factor Family AT3G58030 39.860 5.21e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01442 K10666 - gmx:100780540 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g02564 15 53628745 53632398 Gma08g01442 08 12410879 12411536 GST